Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4144 ATGGGTCGTCGCAAAATTGATATTGAGATCGTGAAAGACCCTAACACGAGACAAGTCACATTCTCAAAGCGTCGAACGGGCTTATTCAAGAAAGCAAATGAATTGTCCATTTTGTGCGGAGCAGAAGTCGCTATTGTTGTGTTCTCCCCCGGGAACAAGCCTTACTCTTTTGGTCACCCAGGGGTTGATGTTGTTGCGGCGAAGTATCTCCAACAAGAGGCTGAATCAAGTGATTCCCATCAACAAGAGGCCGAATCAAGTGATTCCCATCAACAAGAGGCTGAATCAGGCGATTCACAAGGAAACCCCTCTTCTGATGCTTCAAATATGGAAAAATTGAATCTAGAACTTGTTGAGGTGCTAGCACAAATCCGAGAAGGTGAAAAGCAGGCTGAGACTCATGATGAGATTCTGAAGCAAAACAATGTGAAAAAACTCTCCGAGCTGGAAGAATTGAGAAATTCATACAAAGAGCTTCAAAATTGGGTAAAATTACGTCTTAGTGATATTGAAATATCAGAATATATGATGCTTCTTGCTCGGGAACCAGTTGTGGGAATAAAAGCGAAATCTTCAAAAAAGAAAAGAAGAGGAAATTGA 600 0.415 MGRRKIDIEIVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDVVAAKYLQQEAESSDSHQQEAESSDSHQQEAESGDSQGNPSSDASNMEKLNLELVEVLAQIREGEKQAETHDEILKQNNVKKLSELEELRNSYKELQNWVKLRLSDIEISEYMMLLAREPVVGIKAKSSKKKRRGN* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4144 199 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Mal7g4144 199 Gene3D - 14 87 IPR036879 GO:0003677|GO:0046983
Mal7g4144 199 Coils Coil 110 130 - -
Mal7g4144 199 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 191 - -
Mal7g4144 199 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal7g4144 199 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal7g4144 199 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal7g4144 199 MobiDBLite consensus disorder prediction 72 108 - -
Mal7g4144 199 MobiDBLite consensus disorder prediction 93 108 - -
Mal7g4144 199 CDD MADS 2 60 - -
Mal7g4144 199 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal7g4144 199 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Mal7g4144 199 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal7g4144 199 PANTHER MADS BOX PROTEIN 2 191 - -
Mal7g4144 199 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4144 Mal-Chr7 108255955 108256554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g4144 1 181 Type I MADS-box Gene Family AT2G34440 41.176 1.78e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal7g4144 SRF-TF 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g4144 - - mtr:MTR_4g131030 263.077