Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4142 ATGAAGCTTTCTTCAGCCGGTTTTAGCCCTCCACCTCAAGAAGGAGAAAAGCGGGTTCTGGATTCAGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTGCCAGCTGATGGAAGCCGTGTGGTTTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCGACCAACAGGGAAGTCGATACTTATATCCCAAACCCAAGCTTACCTCCCCAACTTATTTGTCAACTTCATAATCTGACTATGCATGCAGATACGGAGACAGATGAAGTGTATGCACAGATGACCTTGCAACCTCTAAATCCTGAAGAGCAAAAGGAGGCATATCTTCCTGCAGAGTTGGGAACTGCAAATAAACAGCCAACAAACTACTTTTGCAAAATTTTGACAGCCAGTGATACAAGCACTCATGGGGGTTTCTCTGTTCCTCGCCGGGCAGCCGAAAAAGTTTTTCCTCCATTGGACTTTACACAACAGCCTCCTGCTCAAGAGTTGATTGCAAGGGATTTGCATGGTAATGACTGGAAATTCAAACATATCTTCCGTGGCCAGCCCAAGCGGCATTTGCTTACAACAGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATTTGGAATGAAAAAAATCAATTGCTTCTTGGCATTCGGCGTGCTAATCGACCACAACATATGATGCCTTCATCAGTGTTGTCAAGTGATAGCATGCACTTGGGGCTGCTTGCTGCTGCAGCTCATGCAGCTGCAACAAACAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCATCAGAATTTGTCATTCCCCTAGCGAAGTATGTCAAAGCTGTATATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTTTTTGAAACAGAGGAATCTAGTGTTCGGCGATACATGGGAACAATAACTGGCATCAGTGACCTGGATTCTGTGCGGTGGCCAAATTCACATTGGCGCTCAGTGAAGGTTGGCTGGGATGAATCCACAGCAGGTGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCACTAACAACCTTTCCAATGTATCCATCTCCGTTCCCCCTTAGGCTTAAAAGACCATGGCCTCCAGGACTGCCTTCATTCAATGGCTTGAAGGATGATGATTTTGGCATGAATTCTCCACTATTTTGGCTTCGAGACGCAGACAGAGGGCTTCAGACTCTTAATTTTCAAGGGATCGGTGTTAATCCTTGGATGCAGGCAAGGCTCGATCCGTCCATGATGAATTTGCAACCAGATATGTACCAAGCTATGGCAGCTGCTGCACTTCAGGATATGAGGACTTTAGATCCTTCTAAACAGCATCCTGCTTCCTTACTTCAATTTCAGCAGCCACAGAATTTCCCCAATGGTAACGCTGTTTTAATGCAGAACCAGATGCTGCAGCAATCTCAACCTCATCAGGCTTTTCCAAAGAATCAAGAAACTCAGCATCCATCTCAATCTCAGGCTCAAACACAACATTTCCAGCAGCTTCTTCAGCATCAGCACTCATTCACTAATCAAAATTATCATCTGCATCAGCAGCAGCAACAACAACAGCAGCAACAACAGCAGCAGCAACAGCAGCAACAACAACAACAGCAACAACAACAACAACAACAAGAGCAACAACAACAACAGCAACAACAACAACAGCAGCAGCAACAACAGCAGCAGCAACAACAACAATCACAACAGCAACAAGTTGTTGATCATCAGCAGATGTCAAATGCCGTCTCTACAATGTCTCAGTTTGTTTCAGCACCTCCATCTCAATCAACGCAACCCATGCAAGCCATCTCTTCAATTGGCCATCAACAGAACTTTTCTGACTCAAATGGGAACTCTGTTTCTCCTTTGCACAATATGTTAGGTTCATTTCCCAATGACGAAACATCTCACCTTCTCAACTTTCCTAGACCAAACTCCTGGGTTCCTGTTCAATCTTCAACCGCACGGCCCTCCAAGCGCGTTGCAGTGGATCCTCTCCTCTCTTCAGGAACATCTCATTATGTTCTGCCTCAAGTGGAGCAACTAGGGCAGTCACAGACTACCATGTCTCAAAATGCTATTACCTTGCCACCGTTTCCTGGTAGGGAGTGTGCTATAGAAGGGAACACCGATCCACAAAACCATCTTTTGTTTGGTTTTAACATAGAGCCCTCATCACACCTAGTTTATAATGAGATGTCTAACCTTAAGAGGGTCAATAGCAACTGTGACTCATCAACTGTACCTTTTCAATCTTCTACATACTTGAATACCACAGGTGCTGATTCTTCACTGAATCCTGGATTGACACACGGCGTTGGTGAGTCGGGTTTCATGCAAACTCCAGAAAATGGAGGTCAAGGAAACCCACAAAACAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTCGGAAGATCATTGGATATCACCAAATTCTCAAACTACCCCGAGCTACGCAGTGAGCTTGCTCGTATGTTTGGGCTCGAAGGTGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGATCAAGAGAATGATGTTCTTCTCCTCGGTGACGGTCCATGGCCGGAATTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGGAACAATGGTCTAGAGCTTCTGAATTCAGCTCCAACTCAGAGGCTCTCTAATGGTATCTGTGATGACTACACCGGACGTGAGGACTCAAGAAATTTAAGCACCGGGCTAACAACTGTGGGGTCTTTAGACTACTGA 2820 0.4539 MKLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLTMHADTETDEVYAQMTLQPLNPEEQKEAYLPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGLKDDDFGMNSPLFWLRDADRGLQTLNFQGIGVNPWMQARLDPSMMNLQPDMYQAMAAAALQDMRTLDPSKQHPASLLQFQQPQNFPNGNAVLMQNQMLQQSQPHQAFPKNQETQHPSQSQAQTQHFQQLLQHQHSFTNQNYHLHQQQQQQQQQQQQQQQQQQQQQQQQQQQQEQQQQQQQQQQQQQQQQQQQQQSQQQQVVDHQQMSNAVSTMSQFVSAPPSQSTQPMQAISSIGHQQNFSDSNGNSVSPLHNMLGSFPNDETSHLLNFPRPNSWVPVQSSTARPSKRVAVDPLLSSGTSHYVLPQVEQLGQSQTTMSQNAITLPPFPGRECAIEGNTDPQNHLLFGFNIEPSSHLVYNEMSNLKRVNSNCDSSTVPFQSSTYLNTTGADSSLNPGLTHGVGESGFMQTPENGGQGNPQNKTFVKVYKSGSFGRSLDITKFSNYPELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSAPTQRLSNGICDDYTGREDSRNLSTGLTTVGSLDY* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4142 939 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Mal7g4142 939 CDD B3_DNA 125 226 IPR003340 GO:0003677
Mal7g4142 939 PANTHER AUXIN RESPONSE FACTOR 1 552 - -
Mal7g4142 939 Gene3D - 290 362 - -
Mal7g4142 939 Pfam AUX/IAA family 801 891 IPR033389 -
Mal7g4142 939 Gene3D - 802 895 - -
Mal7g4142 939 PANTHER AUXIN RESPONSE FACTOR 548 919 - -
Mal7g4142 939 SUPERFAMILY DNA-binding pseudobarrel domain 111 255 IPR015300 -
Mal7g4142 939 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 552 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal7g4142 939 ProSiteProfiles PB1 domain profile. 806 890 IPR000270 GO:0005515
Mal7g4142 939 Gene3D - 124 227 IPR015300 -
Mal7g4142 939 Coils Coil 528 584 - -
Mal7g4142 939 Pfam Auxin response factor 252 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mal7g4142 939 MobiDBLite consensus disorder prediction 484 512 - -
Mal7g4142 939 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 548 919 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal7g4142 939 SMART B3_2 126 228 IPR003340 GO:0003677
Mal7g4142 939 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Mal7g4142 939 SUPERFAMILY CAD & PB1 domains 802 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4142 Mal-Chr7 108216237 108222104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g4142 1 482 B3 DNA Binding Superfamily AT1G30330 83.811 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal7g4142 AUX_IAA 1.2e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g4142 - - gmx:100798719 1446.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g4142 7 108216237 108222104 Mal7g4142 7 108216237 108222104 ECH