LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal7g4074	ATGATTGCGGGTAAAGATCTTCGTAATGGTGTTGCTGACTCTGATGGTGAAACCTCCAGAAACAAGTTATCAAGACCCAATTTTGATCCCAACAAGCGTTACCCAGATGAAAAAGATGCTGTTTTTCTCAGAGATTCAACCATAGGTGGTTCTGGTATTGGTGGGCCCACTGGTAGCAACTCAGGTATACAAGAGCTAACCTTAAGCTACCTTTGTGGCAACCAAAAATTGAATCTTTCTGATAAAGAGATTCATGGTGAAAGCTTTTTGAATTCCTTTGAAAAAATGAGTCAAAAGGGTAAAGAGGTTATGGTTTCTGAGAATTCAAACCAAGATGGAAAATGGGTTGAAAGAGATTTTCTTAGTTTGAGTGATTCTTCAAAGAGATCTGTTGAAGAAGATGTTGAAAGAGAGAGTGTTAGGGATAAGAAACAAAAGCTTGAGACATTGAATCTCTCTCTTGCTTTACCTGATGTGTCTCTTTCTCTTACTGCTTCAAATGCTTTACACAACAATGGTGATCATCAACAACAGCATCATCAACCTGTTAGAGTAAAACCTAGCAGGCCTTCAACTACTCATACTTCATATTCAAATGATTATACAGCACCTTCTTTGTCTTATTCTTATTCAAATCCCTTTTCATTCTCACACAATCCAAGTTGCTCTTTAACTCGAAATTCGACCGATAATTTTGATTATTCGGCGAGTAAAGATGATCAAATTTGGAATTGTGGTGAAGGGACTAATGGTTCTGTTCATAGCAGGTTTAAACCAATTGGTGATGGTGTTGTTGCTTTGTCAAATCATGGTGGTGGAACTGGAACTGGTCTTAGTTCATTCATGCAACAAGGTAATAATAGTCAGTATAAAACTGCTAGTTCAGAAAATCATTCTTTTTTTCCTTCTGAATTGCCTGCTAGACCTAGATTTGAAGCTCATTCAGGGGATTCAAGAGGAAGGAATTCTGAGAATATGAGATTGTTTGAAGGTTTACATGTTAGTGGTAAGATGAGGAATGTTTCGAGACCAGAGAGAATTGTTAGGGATATTGTTTCGGAGTCTATCCCTATTATTTCATTGACAATACAGGAGCTTGATGAGGACATCGTTGCATCGACTAAGGAATACTTGAAGAATCTGATTGAGAACAAGAAAGAAGACTTGGTCAACCTTCAAAACAGGCTTGAGAGAAGGTCTGATCTTACTAAGGAGACTCTTTCAAAGGGCCATAAAGTTCAGTTAGAGATTTTAGTTGCTGTCAAGATGGGACTGCCGAGCTTGTTATACGGTAATCTTCAATTATCTGAGATGGTAGAGGTTTTCTTGCATAGGAGATGTAGAAATGTTATCTGCAAGAGTTTGCTTCCTGTTGATGATTGTGACTGTAAGATTTGCTCGGGAAACAAAGGCTTTTGTAGCTCTTGTATGTGTCCTGTTTGTTTGAACTTTGATTGTGCAAGTAATACTTGTAGTTGGATTGGATGTGATGTTTGCTCACACTGGTGTCATGCTGCTTGTGGCATCCAGAAGAAGCTCATCAAACCGGGACCGAGCTTGAATGGGCCTTCTGGTACCTCGGAAATGCAGTTTCATTGTATTGGATGTGACCATGCGTCGGAAATGTTTGGATTTGTTAAAGATGTGTTCATGTCTTGTGCAAAGGATTGGGGACTTGAAACCTTGTTGAAAGAGCTTGACTGTGTAAGGAGAATTTTCATGGGAAGTGAGGATCGCAAAGGGAAGGAATTGCATTTAAAAACTGATATTCTTTTTCAGAAGCTTCAAACTAAAATGATATCTCCTTCAGAAGCCTGCAATCAAATCATGCAATTTTTCAGCGATGTGGAAAACATGGCAAACTTTCCGGCTTCTGGTTTTTCTTCAAAGGAATTGATAGGTTCTCAAGCCAACCTTCCAAAGGACACACTATCTCTTCCAAAATCTAGTTCTTCAATACCGAAATACGCTTATGAGTCAAGCGATTCTACTAGGCCACATTCGGGTGCCCCGTCCAAAGATCTTCATCAAAAAGACTTCAAAGCTACCATCTTAAGCGAACTAAAAAATGACGCTGATCTTCAATTGGCAGCTTTACTAAGCAAAGGTGGAATTGAAAGTTTGGAGAGCATTGTTCGGATAAAGGAGGCAGAAGCGAAAATGTTCCAAACCAAGGCAGATGAAGCAAGGAGGGAGGCAGAAGGGTTCCAGAAGATGATCAGGACAAAGACTGCACAGATGGATGAAGAATATGCAACAAAGCTTTCAAAACTCTGTCTGAATGAGACCCAGGAAACGCAGAGGAAGAAATCGGATGAACTGAAAGTTGTGGAAAATTCTTATTTTGATTACTATCAAATGAAAAAGAGAATGCAAGAAGATATTGATAGTTTGTTCAAGAGAATGGAGGCAACAAAGCAGCATTGGGTTTAA	2433	0.3913	MIAGKDLRNGVADSDGETSRNKLSRPNFDPNKRYPDEKDAVFLRDSTIGGSGIGGPTGSNSGIQELTLSYLCGNQKLNLSDKEIHGESFLNSFEKMSQKGKEVMVSENSNQDGKWVERDFLSLSDSSKRSVEEDVERESVRDKKQKLETLNLSLALPDVSLSLTASNALHNNGDHQQQHHQPVRVKPSRPSTTHTSYSNDYTAPSLSYSYSNPFSFSHNPSCSLTRNSTDNFDYSASKDDQIWNCGEGTNGSVHSRFKPIGDGVVALSNHGGGTGTGLSSFMQQGNNSQYKTASSENHSFFPSELPARPRFEAHSGDSRGRNSENMRLFEGLHVSGKMRNVSRPERIVRDIVSESIPIISLTIQELDEDIVASTKEYLKNLIENKKEDLVNLQNRLERRSDLTKETLSKGHKVQLEILVAVKMGLPSLLYGNLQLSEMVEVFLHRRCRNVICKSLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHAACGIQKKLIKPGPSLNGPSGTSEMQFHCIGCDHASEMFGFVKDVFMSCAKDWGLETLLKELDCVRRIFMGSEDRKGKELHLKTDILFQKLQTKMISPSEACNQIMQFFSDVENMANFPASGFSSKELIGSQANLPKDTLSLPKSSSSIPKYAYESSDSTRPHSGAPSKDLHQKDFKATILSELKNDADLQLAALLSKGGIESLESIVRIKEAEAKMFQTKADEARREAEGFQKMIRTKTAQMDEEYATKLSKLCLNETQETQRKKSDELKVVENSYFDYYQMKKRMQEDIDSLFKRMEATKQHWV*	811

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal7g4074	810	Coils	Coil	788	808	-	-
	Mal7g4074	810	PANTHER	PROTEIN OBERON 3	1	810	-	-
	Mal7g4074	810	MobiDBLite	consensus disorder prediction	643	668	-	-
	Mal7g4074	810	MobiDBLite	consensus disorder prediction	169	201	-	-
	Mal7g4074	810	MobiDBLite	consensus disorder prediction	10	41	-	-
	Mal7g4074	810	Pfam	PHD - plant homeodomain finger protein	447	571	IPR032881	-
	Mal7g4074	810	CDD	PHD_OBE1_like	477	536	-	-
	Mal7g4074	810	MobiDBLite	consensus disorder prediction	1	41	-	-
	Mal7g4074	810	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	1	810	IPR004082	-
	Mal7g4074	810	Pfam	Coiled-coil region of Oberon	677	798	IPR032535	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal7g4074	Mal-Chr7	107250859	107254680	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal7g4074	447	544	PHD Gene Family	AT5G57380	28.283	6.27e-07	51.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal7g4074	-		-	gmx:100820216	1193.72

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal7g4074	7	107250859	107254680	Mal7g4074	7	107250859	107254680	ECH

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