Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4007 ATGGCATCACCACAGGTTGAAATAGCTTCCTTTGATTCAACACCAAAATGGGTTTCAAGAGTTGCTAAAAACAACCTTGGAAGCCTGGATTGCAATAAAAGATTTCGTAATGCATTTGGAGACAAAGATGATTCTTCTTTGTCTGCGTTGGTGAGTCCGAGACACTCGAAGATCATTGATCGATGGGCTGCAAGACAGGCTCAAGAAGTTGTGAAAAATCTTGAAAAAAATAATGAGAATGTTGTTGTTAAGAGGTTTGATAATTTTCCTTCAAGGTCTTCAAGTTTCAATTCTAGGAGAGAAAGAGAAGTTTCTATTTCGCCTCCTCGTTCTGACGGATCATCTGAAAGCGAAACAACATTCAACATTGGTGCTTCTTCTCTTGTTCAGATGTGGGAAAAAAGGCTCAACAACCAATCCAATTGCACAAAACAAAATGCACCATCATATGTGAGAACTAATTCTAGTTCAAGCTCTAATGAGATTAATGCTTGTTATGTGGAAGAACATAGCAGGGTATCAGAAAAAGGCGAATCCTTTGATGATGCATTTTCATCCGGGGAATCTGATAAACCAAGACTAAGTATTGATGAAACTTGTTCATCAAAAGTGCATTGTAAATTAGATGCTTCTCAAAGTGAGAAAATCAAGGTTGCTGATATTATAAAGAGACTTTCGATTACAAGTGATGAGAATGATCATGAGTTAAGTAATAGTGTTACAAGTTCTCCATGTGTTTCCACACCAAAGCAATTAGCAGAACATAAAGGTTTTGTTCAAATCACAAGTTTCCCGCGAATTAGGGGGCGCCAAGCATTCAATGATTTGATTATGCAGTTTGAGTGTGATCGACATGGAGAGCTTAACAATCTTGCAGAACGAGGCGCAGTTTCTAAGTTCACACAAAGAGGTCGCATTCAGTCATTACTTCGACTTAGATTATTACAACGTGGAGTAGCAGCTTTTGATCCATCCCGCTTGAAATCAACAACACCGGAAGGGAACAAACAACAACAAGGATCAGTAATCATGCAACTAAGGGAAAAATTTAACACAAAAAATGAACAGAGAGCTTCATCCCTAGCAGAAGTGATTGTGCCAAAAAGTCCATGCAGGGAGATAGTAAACAATACATCCTTAGCAGAAGTGACTGTGCCAAAAAATCCATGCAGGGAGATAGTAAACAACACCATACAATTGGATAACTATCACACTACTAATCAACTTAACAAAGAAAATGCTTGTTGCAAGATAGTAACGAACATCAACACCAAGAAACATAAACAAAATGTAGTGTCTCAAATTAGTGCAGATGTCAAAGAAGAAGCTCGTTCGAGTTCTGGCTTTGAAGCATATAATCATCATGATCCAAACGAAACTTCTACGATATCATCATCCAAGGATGACTCAAACGCAAATGAAACAGCTGAGAAAGTAAAGGCAAGAGACCAACAATTATATGATACTATTGAAACTAGTTATTACAATGAGATGTTAGAAGAAAAAGAGTGTAGTGACTATAATTATGATGAAACTATAGAAAGTTATGATTGGGCAAGTCCTATTTCTCGGCCTAGAAGCTATTGGGAAGAGATTAGACAAGAATGGTATAAGGAAATGCTTGACTTTGGGTCACACAATGATGAGAGACGTAAACTCCTTGAAAGAAAAACAGTTTCAACCGTCCTTTCTAGTGACTTTCGAGAAAAGATGGATAAATTGATGAAGTCTCATGTGGGAACACAAACACACTTGATCAATAATCAATGCGATGAGGAAGATGAAGAAGAAAGTACAAAACAATTGATGTCATTTTACCACAACCGCTTGCGTGACACAAGGGAAAAAGAGGTGAGAAGAAACGAGGAAGAAGTGGATGAAGAAAAGGCAGAGGAACATGAACACGAAAGCATCAATAGTGGTTCAGATCATGAACTTGGTGATTGTCAATCCTCATCATCAATAGATACACCATCCTCAGCAACATGGAGTTATAGAGACACTGATGGTGGAGATGATTCTGATAGAGTTGCATTTGTATCCTCACCATTGCCTTCTCAATCTCAATCTTGCTATGAAGATAGTAGACAATACTCTCCATCCACAGATCAACGTTCAATTGAAATGGATTTCATATACGGTATGCGAGGGCAAATGGAACAACTTTTTCAAGAGATGTCTGAGTTAAGGAAAACAATAAAAAACTGCACAGACATCCAGATGCAGATGCAATTACAACAATCCCAAAATCAAGAGGTTCACAAATTTTCTGTGAAAGAAAAGAAACTCAACAAGACATCAAAGAAAGGCATGTGCTGCATTTGCAATGAAAATAAAGTAAACTCGGTTTTATACAGATGTGGGCACATGTGTGCATGTTTCAAATGTGCCAATGAGTTGCAATGGAAAAGCGGAAAATGTCCAAAATGCCAAATTGCAATAATAGATGTTGTCGAAGTACATATCAACACATAA 2475 0.3762 MASPQVEIASFDSTPKWVSRVAKNNLGSLDCNKRFRNAFGDKDDSSLSALVSPRHSKIIDRWAARQAQEVVKNLEKNNENVVVKRFDNFPSRSSSFNSRREREVSISPPRSDGSSESETTFNIGASSLVQMWEKRLNNQSNCTKQNAPSYVRTNSSSSSNEINACYVEEHSRVSEKGESFDDAFSSGESDKPRLSIDETCSSKVHCKLDASQSEKIKVADIIKRLSITSDENDHELSNSVTSSPCVSTPKQLAEHKGFVQITSFPRIRGRQAFNDLIMQFECDRHGELNNLAERGAVSKFTQRGRIQSLLRLRLLQRGVAAFDPSRLKSTTPEGNKQQQGSVIMQLREKFNTKNEQRASSLAEVIVPKSPCREIVNNTSLAEVTVPKNPCREIVNNTIQLDNYHTTNQLNKENACCKIVTNINTKKHKQNVVSQISADVKEEARSSSGFEAYNHHDPNETSTISSSKDDSNANETAEKVKARDQQLYDTIETSYYNEMLEEKECSDYNYDETIESYDWASPISRPRSYWEEIRQEWYKEMLDFGSHNDERRKLLERKTVSTVLSSDFREKMDKLMKSHVGTQTHLINNQCDEEDEEESTKQLMSFYHNRLRDTREKEVRRNEEEVDEEKAEEHEHESINSGSDHELGDCQSSSSIDTPSSATWSYRDTDGGDDSDRVAFVSSPLPSQSQSCYEDSRQYSPSTDQRSIEMDFIYGMRGQMEQLFQEMSELRKTIKNCTDIQMQMQLQQSQNQEVHKFSVKEKKLNKTSKKGMCCICNENKVNSVLYRCGHMCACFKCANELQWKSGKCPKCQIAIIDVVEVHINT* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4007 824 SUPERFAMILY RING/U-box 771 816 - -
Mal7g4007 824 CDD mRING-HC-C3HC5_NEU1 772 810 - -
Mal7g4007 824 MobiDBLite consensus disorder prediction 680 704 - -
Mal7g4007 824 MobiDBLite consensus disorder prediction 613 704 - -
Mal7g4007 824 MobiDBLite consensus disorder prediction 451 470 - -
Mal7g4007 824 Coils Coil 64 84 - -
Mal7g4007 824 MobiDBLite consensus disorder prediction 613 642 - -
Mal7g4007 824 PANTHER BNAC05G24000D PROTEIN 14 823 - -
Mal7g4007 824 Pfam Zinc finger, C3HC4 type (RING finger) 769 816 - -
Mal7g4007 824 MobiDBLite consensus disorder prediction 92 119 - -
Mal7g4007 824 MobiDBLite consensus disorder prediction 446 483 - -
Mal7g4007 824 ProSiteProfiles Zinc finger RING-type profile. 772 811 IPR001841 -
Mal7g4007 824 PANTHER BNAC05G24000D PROTEIN 14 823 - -
Mal7g4007 824 Coils Coil 719 739 - -
Mal7g4007 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 745 823 IPR013083 -
Mal7g4007 824 Coils Coil 611 631 - -
Mal7g4007 824 MobiDBLite consensus disorder prediction 643 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4007 Mal-Chr7 106340357 106343810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g4007 763 824 C3H Transcription Factor Family AT3G06140 32.258 4.51e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g4007 - - mtr:MTR_4g094795 1219.14