Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3945 ATGGATCGTAAAAAAATAGAGATGGAACTTGTGGAGAACAAAAATGCTAGGTATGTCACATTTTCAAAGAGAAGGAAGGGTCTTTTTAAGAAAGCAAGTGAGTTATCAATTCTTTGTAATGCTAGAGTTGGTATAGTTGGATTTACCCCAGCTGGTAACCCATTTGCTTTTGGTTCTCCAAATTTCCAAGCTGTGACTGAAGAGTACCTTCATGAAAGACAAGAATTAGAAGGTGAATCATCAAGGCAAAATGTTGAGCCTGCTGAACAACAAAATATCAACATGGTCAACAAACAGTTGAGTAGTTTGACCAAAGAGCTGAAGAAGGTGGAAGAAGTTGACAAAGGTAAAGCCCCCATTGCACCTGCTGATCTTGACTTGGAAAAACTTCTAAAAGTGAAAGCTTCACTGAAAGAGCTTCGTGGTGACATTCAGGCAGCATCATCTTTGCTTCTCCTTTCAAAGAAACCTATACACATCATTGATTTGGAGGGGATGATCTAA 504 0.3889 MDRKKIEMELVENKNARYVTFSKRRKGLFKKASELSILCNARVGIVGFTPAGNPFAFGSPNFQAVTEEYLHERQELEGESSRQNVEPAEQQNINMVNKQLSSLTKELKKVEEVDKGKAPIAPADLDLEKLLKVKASLKELRGDIQAASSLLLLSKKPIHIIDLEGMI* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3945 167 Coils Coil 93 113 - -
Mal7g3945 167 PANTHER MADS BOX PROTEIN 2 161 - -
Mal7g3945 167 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 161 - -
Mal7g3945 167 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal7g3945 167 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal7g3945 167 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal7g3945 167 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Mal7g3945 167 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Mal7g3945 167 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal7g3945 167 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal7g3945 167 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3945 Mal-Chr7 105433443 105433946 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g3945 1 156 Type I MADS-box Gene Family AT2G34440 37.791 1.16e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal7g3945 SRF-TF 3.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3945 - - mtr:MTR_4g094638 240.736