Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3942 ATGGGTCGTAAAAAAATAGAGATGGAACTTGTGGAGAACAAGAATGCTAGGTATGTCACATTTTCAAAGAGAAGGAAGGGTCTTTTTAAGAAAGCAAGTGAGTTATCAATTCTTTGTAATGCTAGAGTTGGTATAGTTGGATTTAGCCCAGGTGGTAACCCATTTGCTTTTGGTTCTCCAAGTTTTGAAGTTGTGACTAATGAGTACCTTCATGAAGGACAAGTTGAATCATTAAGACAAAATGTCCAGCCTTCTGAAAACGAAAATATCAACATTGTCAACAAACAACTTATGGGTGTGACGGAAGAGCTAAAGAATGTGGAGAAAATTGACGAAGGTAAAGTCCCTGTTGCCCTTGCTGATCTTGATTTAGAGGAACTTCTAAAAGTGAAAGCTTCATTGAAAGAGCTCAAGGGTGACGTTGAGGCAGCATCATCTTTGCTTATGCTTGCAAAGAAACCCATATACATCATAGATTTAGATCGTAAAAGAATGGGGAAATCCAATGATATGGAAACTAATTATTAA 528 0.3712 MGRKKIEMELVENKNARYVTFSKRRKGLFKKASELSILCNARVGIVGFSPGGNPFAFGSPSFEVVTNEYLHEGQVESLRQNVQPSENENINIVNKQLMGVTEELKNVEKIDEGKVPVALADLDLEELLKVKASLKELKGDVEAASSLLMLAKKPIYIIDLDRKRMGKSNDMETNY* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3942 175 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal7g3942 175 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Mal7g3942 175 PANTHER MADS BOX PROTEIN 2 159 - -
Mal7g3942 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 159 - -
Mal7g3942 175 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal7g3942 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Mal7g3942 175 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Mal7g3942 175 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal7g3942 175 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal7g3942 175 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3942 Mal-Chr7 105409578 105410105 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g3942 1 153 Type I MADS-box Gene Family AT2G34440 38.372 6.78e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal7g3942 SRF-TF 6.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3942 - - mtr:MTR_4g094638 240.736