Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3940 ATGGCGAAAAATGCTTCGTCTTCGGCCTCCGCCTCCAACTCCACCTCCTCCCGAAAACTAGTGTTGAGCGTTAAATCAAATGAGGGAATGAAGAGATCGTTACGGCAGATCAAGTCAAGAGAGAAAACCAAAGCAAAGCAAAATAAAAGCAAACAAAAGATTCATGCTAAGAAGCCAAAGAAACCCCCTACTGCTTTCTTCTACTTCTTGGAGGATTTTCGGAAAGAGTTTAAAGATCAGAATCCAGATGTTAAGTCAATGCGCGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGATATAGCAACAGAAAAGCGTGCAGAATTTGAAAGAGCAACGACAGAGTATAACAAGAAAATGGAAAGTGGTGAATATGAAGAAACTGATGAGGAGTCAGAGTATGATGAGTAA 444 0.4054 MAKNASSSASASNSTSSRKLVLSVKSNEGMKRSLRQIKSREKTKAKQNKSKQKIHAKKPKKPPTAFFYFLEDFRKEFKDQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFERATTEYNKKMESGEYEETDEESEYDE* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3940 147 CDD HMGB-UBF_HMG-box 59 123 - -
Mal7g3940 147 MobiDBLite consensus disorder prediction 44 60 - -
Mal7g3940 147 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 59 128 IPR009071 -
Mal7g3940 147 SMART hmgende2 58 129 IPR009071 -
Mal7g3940 147 SUPERFAMILY HMG-box 50 133 IPR036910 -
Mal7g3940 147 MobiDBLite consensus disorder prediction 128 147 - -
Mal7g3940 147 PANTHER HIGH MOBILITY GROUP B PROTEIN 14 4 146 - -
Mal7g3940 147 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 146 - -
Mal7g3940 147 MobiDBLite consensus disorder prediction 1 23 - -
Mal7g3940 147 Pfam HMG (high mobility group) box 59 128 IPR009071 -
Mal7g3940 147 MobiDBLite consensus disorder prediction 1 61 - -
Mal7g3940 147 Gene3D High mobility group box domain 52 144 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3940 Mal-Chr7 105385604 105388944 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mal7g3940 HMG_box 9.7e-19 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3940 - - gmx:100809401 184.496