Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3907 ATGGCCCCGAAAAGAACATCAAGAGGAAAACAGAAGCGAGAGATGAAAAAGATTGAGAGAGAGAAAGATCTTTTCTTAGCATTTACAAAGAGAAAATCGGGCATTTACAACAAGGCCTCCGAATTAACAACACTTTGTGGGGCTTTAGTGGATATTCTTATTCTTTCTCCAAGAGGAAAACCATTTTGTTATGGAGAACCTTCTTCTCAATCCATAACAAGAACTAGTTTGAACGATGAAAATCCTTCTATAGAAGAGGAAATAAAGAAATTGAAGATTGCAGGATATAATATAAAAAATGATGATGTTTTGGATAAGAAGCATGTTGCGGAAGCACAACGTAACAATTTGAAGACATTGATAAGTTCTGGCTATTGGTCGATCAAAGACAAAGATGATGAAAGCTACCAATACGATCAAGTAAAAGAAGTGGACACATCTTTAGTGAATGTCGCAAATAAAATTATTAATAATGTCCTAAGTAGCGGAGGAGAGATTAATCCACATGCAATTTCATCCATAGACGAACTGAATGGAGTCGAAACAAATCCTCCTTATGTCTTTGGTGCAATCTTTCCTCCCATTGAAGCCCATGGATCCAACCTTTTTGATCCAAATGGTAAAGGCAAGGTTGTCATTGATTCTCTTAACCCTATAAATCAAGCACAAGGAATTAACGTTGTTGGTGCAAGCGGAAGTGGAAGTGGTGTTGATCAGGCTCATCCAGATATATGA 735 0.3714 MAPKRTSRGKQKREMKKIEREKDLFLAFTKRKSGIYNKASELTTLCGALVDILILSPRGKPFCYGEPSSQSITRTSLNDENPSIEEEIKKLKIAGYNIKNDDVLDKKHVAEAQRNNLKTLISSGYWSIKDKDDESYQYDQVKEVDTSLVNVANKIINNVLSSGGEINPHAISSIDELNGVETNPPYVFGAIFPPIEAHGSNLFDPNGKGKVVIDSLNPINQAQGINVVGASGSGSGVDQAHPDI* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3907 244 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mal7g3907 244 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mal7g3907 244 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mal7g3907 244 SUPERFAMILY SRF-like 9 74 IPR036879 GO:0003677|GO:0046983
Mal7g3907 244 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mal7g3907 244 Coils Coil 74 94 - -
Mal7g3907 244 PANTHER MADS BOX PROTEIN 7 162 - -
Mal7g3907 244 PANTHER AGAMOUS-LIKE 58-RELATED 7 162 - -
Mal7g3907 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mal7g3907 244 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mal7g3907 244 Gene3D - 22 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3907 Mal-Chr7 104992635 104993759 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g3907 5 84 Type I MADS-box Gene Family AT4G36590 46.914 3.12e-17 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal7g3907 SRF-TF 7.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3907 - K12412 mtr:MTR_3g104630 167.162