Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3851 ATGAGAAACAACAAGATGAAAGCTTCGAAGTTGAGAACTTCGAACGAGAACGTTTCGCCATTGATGATCGAGTTGGATGATAACAGAGGACTACGTTATCTCCAATCAACGACGACGAGTCCAGGTTTTCAAACCTACGCCGCTGAGAACTTCGACGTCACCGGCTCGTCGTCGCCGCTCGCTAAATACTTCTACGCCGGCTCTCCGATTTCTGCTAAATCCGGTGACTCCTTCACTTCTCCGATTTACGGCTCCAGCAAGTACAGGTCAGCAAAAACGCCGCCGTACTCCGGCAACAGTTCAGGGAACAGTAGCTTCGGTTCTCGTGGTAGATTGTCTCTCTCGCCGCTTGCTTCAATTGAGAACTTGGAGAGAAAGCAGCTCTCGTCGCCGCCGATGTACAGAACGCCGGTGAAGGGTGGCGAGGAAGTTTTTGTGATGGATGATATTCAGGTGAGGCCAATGTCAGGAGGAAAGAGCGGAAGATCTTCATCTTCATCATCATCTTCTTCCAGTAGAGGCTCTTCATCTTCTTCCTCTTCTTCGTCGTCGACGAAGATTGTGTTTAAGAAGGAGATTTGCAGAGCGTGGGAGGAATCTGGAAGCTGCCGCTATAAATCCAAATGCCAGTTTGCCCATGGAAGAGAAGAGCTTCATCCAAGTCGTCATTCCGCGAAGAACAAATCTGAGGCACAGATGGGCAAATCATCTATGAGACCAGGACTTTGCATGTATGGCTCAGATAGCCTCATTGTTCCTGAATCTGTTGTAGTAGCTGAATCTGGACCTGTAGTCACAAGACTCGCAAGATCCCAACCAGCTTCGCCTGAACCTCATTGTACCCATGCCAATCCCAACACCATCAGCGATTGGTCACCCCTGGATGATGGCATTGAGGCTATCCTCCCAAATGCTTCAGACAGAGTTCCCTCTAGGGAGGAAGTTGATGCATACATATATGGCATTCTCAATCAGCCGACCACCAAAAGAAGACTACCAGTTTTTGCGGCACTTTGCGAGGGGCAGTAA 1029 0.4917 MRNNKMKASKLRTSNENVSPLMIELDDNRGLRYLQSTTTSPGFQTYAAENFDVTGSSSPLAKYFYAGSPISAKSGDSFTSPIYGSSKYRSAKTPPYSGNSSGNSSFGSRGRLSLSPLASIENLERKQLSSPPMYRTPVKGGEEVFVMDDIQVRPMSGGKSGRSSSSSSSSSSRGSSSSSSSSSSTKIVFKKEICRAWEESGSCRYKSKCQFAHGREELHPSRHSAKNKSEAQMGKSSMRPGLCMYGSDSLIVPESVVVAESGPVVTRLARSQPASPEPHCTHANPNTISDWSPLDDGIEAILPNASDRVPSREEVDAYIYGILNQPTTKRRLPVFAALCEGQ* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3851 342 MobiDBLite consensus disorder prediction 157 182 - -
Mal7g3851 342 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE PROTEIN 2 338 - -
Mal7g3851 342 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 189 215 IPR000571 GO:0046872
Mal7g3851 342 Gene3D - 180 221 - -
Mal7g3851 342 MobiDBLite consensus disorder prediction 83 109 - -
Mal7g3851 342 MobiDBLite consensus disorder prediction 152 182 - -
Mal7g3851 342 PANTHER CCCH ZINC FINGER/TIS11-RELATED 2 338 IPR045877 GO:0003729
Mal7g3851 342 MobiDBLite consensus disorder prediction 216 238 - -
Mal7g3851 342 SMART c3hfinal6 188 215 IPR000571 GO:0046872
Mal7g3851 342 ProSiteProfiles Zinc finger C3H1-type profile. 189 216 IPR000571 GO:0046872
Mal7g3851 342 SUPERFAMILY CCCH zinc finger 187 219 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3851 Mal-Chr7 104327313 104331003 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g3851 190 231 C3H Transcription Factor Family AT1G68200 45.238 6.51e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal7g3851 zf-CCCH 9.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3851 - K18753 gmx:102665928 240.35