Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3568 ATGATACAAAGCCAACAACAAGTAAACAAAGAAGACGATGACGACGGCCCGCCACCCGGTTGGCAACCTATCCCCGCTCCGCTACGCCCACCGCCACGTCCACTTTCATCCGGTTTTGCTCAAATGGTTTGTGGTTCTTGTCGTCGCCTGCTTTCATATCCACCAGGTGCTAAACATGTCAAATGTTCATGTTGTCAGACAGTCAACATTGTATTAGAAGCTGATCAGGTTGGACAAGTTAAGTGTGGGAGTTGTGCAGTATTGCTAATGTACCCATACGGTGCTCCACAAGTTAGGTGTTCATCATGCCAGTCTGTGACAGTAATTGAGGCTAACAATAAGCGGCCTCCATGGTCTGTACAACAAAGTAAACCAACTCCTCCCAAAACTGGTTGTTAG 399 0.4737 MIQSQQQVNKEDDDDGPPPGWQPIPAPLRPPPRPLSSGFAQMVCGSCRRLLSYPPGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGAPQVRCSSCQSVTVIEANNKRPPWSVQQSKPTPPKTGC* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3568 132 MobiDBLite consensus disorder prediction 18 34 - -
Mal7g3568 132 Pfam LSD1 zinc finger 82 106 IPR005735 -
Mal7g3568 132 Pfam LSD1 zinc finger 44 68 IPR005735 -
Mal7g3568 132 PANTHER PROTEIN LOL2 27 128 - -
Mal7g3568 132 MobiDBLite consensus disorder prediction 1 34 - -
Mal7g3568 132 PANTHER PROTEIN LSD1 27 128 IPR040319 -
Mal7g3568 132 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 41 71 IPR005735 -
Mal7g3568 132 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 79 109 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Mal7g3568 zf-LSD1 5.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3568 - - gmx:100780865 209.149