Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3550 ATGACTGTTATCGTCAGCAGAGGCGGCCGACGGGGGAAGCCGTGCACGCTGAACCTAGATAAACCGGTTGAACCCGAATTCAATCTATATCCACATGGATTCTTGTACGACTTATGGATGAGATTCTATCAAATGTATATCTCTAGGCAAGATATGCCAGGATCCTCCGGTCAGAATCAGGCCCCAAACATTACTGCCATAATGGTCTCTACCCCTCAAATAATTCGTGAAGGATATATTATTCGACACCTCTCATGTTTTCCAACCCAACAGACGCTTTTGACCTGCGATTTTTCATCAGATGGAAGTATTGTAGCAAGTTGCGGGTTTGGGACAAAGCCTTTCATCTGCTACACGGAGCCTTGTAATTCTGCTTATACATCAGGGACAGGGTTACATTCATGTACCATCTTTGATATTAGATTTAAACCAGGTTCAACTATGTTTGCAACATCCTCTGCTGATAAAACAGTAAAATTGTGGGATGCAAAAAGACCTGCAAGAATGTTGTTCAGTTTTAGACATAATGGGATAGTAAAATCATTGGACTTCCACCCAACAGAAGAATTTCTTTGCTCGTCCGATACACAGGATGGAATTCAAGTATGGAGTCTCAGTCATTATATTAAGATTAAAAACTGTAAGGCAGGTGTAAGCCTGGTGAGATTTCAGCCTGTATCTGGGATGCTTTTGGCAGTTGCTAATCAAAATGTTATCGACATACTTGATTTTAAGACTTTTATTGTTCTGAAACGTCTTCAGGGACACGTCAAATATATCCGTTCCTTGTGTTGGGATGTTACTGGGCAAATGATCGCCTCTGTCAGCGAAGATGGTGTACGTGTCTGGACGCTTTCTATGAACGGACAGTGCTTATATGAGTATCCATCAAAAGGGAAGATGTTTATGTCCGTCATATTCCATCCGCGATACAGTAACGTCTTAGTTGTTGGTGGTTTTGAGCCTTTCATTTGCAACGTGGAAACTTGTGATTCTGTTACTACGTCAGAGTCACATTCTTCTACTATCTTCGAAGTTAGATTTAAACCAGGATCAACTATATTTGCAACATCTTCTGCTGATAAAACATATTACTACAACATGAGTCTGAATCATGTCAAAGACATTAAATCTATATGTTGGGATGTCACTGGGGAAATGATAGCCTCTGCCAGTGAAGATGATGTACGCGTCTGGTCGCTTTTGATGGACGGAAAATGCTTATATGAGTATGCATCAAAAGGAAATAGATTTATGTCCATCACATTCCATCCTCGATACCATAATGTCTTAGTTATCGGTGGTTTACAGGTAAACTCTTCCCTCTATTATTGA 1335 0.4052 MTVIVSRGGRRGKPCTLNLDKPVEPEFNLYPHGFLYDLWMRFYQMYISRQDMPGSSGQNQAPNITAIMVSTPQIIREGYIIRHLSCFPTQQTLLTCDFSSDGSIVASCGFGTKPFICYTEPCNSAYTSGTGLHSCTIFDIRFKPGSTMFATSSADKTVKLWDAKRPARMLFSFRHNGIVKSLDFHPTEEFLCSSDTQDGIQVWSLSHYIKIKNCKAGVSLVRFQPVSGMLLAVANQNVIDILDFKTFIVLKRLQGHVKYIRSLCWDVTGQMIASVSEDGVRVWTLSMNGQCLYEYPSKGKMFMSVIFHPRYSNVLVVGGFEPFICNVETCDSVTTSESHSSTIFEVRFKPGSTIFATSSADKTYYYNMSLNHVKDIKSICWDVTGEMIASASEDDVRVWSLLMDGKCLYEYASKGNRFMSITFHPRYHNVLVIGGLQVNSSLYY* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3550 444 Gene3D - 213 321 IPR015943 GO:0005515
Mal7g3550 444 SMART WD40_4 246 284 IPR001680 GO:0005515
Mal7g3550 444 SMART WD40_4 363 400 IPR001680 GO:0005515
Mal7g3550 444 SMART WD40_4 329 362 IPR001680 GO:0005515
Mal7g3550 444 SMART WD40_4 119 162 IPR001680 GO:0005515
Mal7g3550 444 SMART WD40_4 166 204 IPR001680 GO:0005515
Mal7g3550 444 Pfam WD domain, G-beta repeat 250 283 IPR001680 GO:0005515
Mal7g3550 444 Pfam WD domain, G-beta repeat 133 162 IPR001680 GO:0005515
Mal7g3550 444 Pfam WD domain, G-beta repeat 372 400 IPR001680 GO:0005515
Mal7g3550 444 SUPERFAMILY WD40 repeat-like 326 435 IPR036322 GO:0005515
Mal7g3550 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 171 IPR001680 GO:0005515
Mal7g3550 444 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG-LIKE ISOFORM X1 322 364 - -
Mal7g3550 444 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG-LIKE ISOFORM X1 371 437 - -
Mal7g3550 444 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG-LIKE ISOFORM X1 30 321 - -
Mal7g3550 444 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 30 321 IPR044716 GO:0003714
Mal7g3550 444 Gene3D - 76 212 IPR015943 GO:0005515
Mal7g3550 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 130 162 - -
Mal7g3550 444 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 371 437 IPR044716 GO:0003714
Mal7g3550 444 Gene3D - 324 440 IPR015943 GO:0005515
Mal7g3550 444 SUPERFAMILY WD40 repeat-like 90 363 IPR036322 GO:0005515
Mal7g3550 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 206 IPR001680 GO:0005515
Mal7g3550 444 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 322 364 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3550 Mal-Chr7 100653038 100658083 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g3550 83 285 U-box Gene Family AT2G33340 24.887 5.02e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3550 - - cam:101496351 358.221