Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3547 ATGGACCCGGAAAAATCCCATGAAGAAGCACAGCGTCTTTTTGATATCTTTATCCATGATTATTTCAACAAGACTGGATTCTCAAAATGTGCCGAGATTTTCCGAAATGAAGCTCGAGTTACTGGACAAACTCCCCCTGAGTTTGATCAACCCCCACATGGAATCTTGTACGATGTTTGGAATGCCCCAAACGTTGCTGCTGTAATGAACACTACTCCTCAAATAATTCGTGATGGATATTCTATTCAACACCTTTCAAGTTTTCTAAGCGGTCAGACGCTTTTGTCCTGCGATTTTTCATCAGATGGAAAGATTGTAGCAAGTGGTGGGAAAAGCGGGAAGCCTTTCATTTGCTACATGGAATCTTGTGATTCTGTTACTACCTCAGAGACACATTTATCTACCATCTTAGAAGTTAGATTTCGACCAGGATCGACTATATTTGCAACATCTTCTGCTGATAAAACAGTAAAATTATGGGATGCAAACAAACCTGGAAATATGTTGTTCGATGGTGATGGACATAAAGGGACAGTTAGATCATTGGACTTCCACCCATTAGGAGAAATTCTTTGCTCGTCCGATATCTGTGATGTAATTAAAGTATGGGATCTCAATCAGTGTGTCGTGATTCAAAGCTTGAGCATTGATTCATCTATGGCAGGAAGCCTAGTGAGATTTCAGCCTGGATCTGGGAAGCTTTTGGCAGTTGCTAATCAAACTGTTATCACCATACTTGAATTTCCGTCTTTGGTTGTTAGGAACTGTCTTCAGGGTCATGTCAAAAATATTTGTTCCTTATGTTGGGATGTCACTGGGCAAACAATCGCCTCTGTCAGTGAAGATTGTGTACGTGTCTGGTCGCTTTCTATGGACGGACAATGCTTTTACGAGTATCCATCAAACGGGAAAAGGTTTCAGTCCGTCATATTCCATCCTCGATACCGTAACGTCTTAGTTGTTGGTGGTTTTCAGTGCATGGAATTGTTGACTCTTGAGCACGGGCAAATACATTGTCTTAGTGCCTCTACCTCTGGTTTATCATTTACTGGACTTGCAGCTTGTATAGGAGATGAATCCTTTGCATCAACTACAACTAGCAATGACTCTGTAGGACACGTCAAAGAAATTAATTCCATATGTTGGGATGCCACTGGGAAAATGATTGCCTCTGTCAGTGAAGATGATGTACGTGTTTGGTCGGTTTTAATGGGGAGAGAATGCATATATAAGAATCCATCAAATGGGAAGATGTTTCAGTCCGTCATATTCCATCCTCGACACCCTAACGTCTTAGTTATTGGTGGTTTTCAGTGCTTGGAATTGTTGATTATTGAGAATGGCCAAACAAGTAGTGGTAGAAGGGCTTCTGATTTATCAATTACTGGACTAGCAGCTACTGTGGCAGGAAATGAAATTATTGCATCAGTTAGCAATGATTCTGTGGTGAAGATATGGGATGAAGTTCTAGTTAATGTCATCATGCTTTTCTATATTATAGGAGAATATCAATGTTGTGACAAATTAACTGCATAG 1536 0.4043 MDPEKSHEEAQRLFDIFIHDYFNKTGFSKCAEIFRNEARVTGQTPPEFDQPPHGILYDVWNAPNVAAVMNTTPQIIRDGYSIQHLSSFLSGQTLLSCDFSSDGKIVASGGKSGKPFICYMESCDSVTTSETHLSTILEVRFRPGSTIFATSSADKTVKLWDANKPGNMLFDGDGHKGTVRSLDFHPLGEILCSSDICDVIKVWDLNQCVVIQSLSIDSSMAGSLVRFQPGSGKLLAVANQTVITILEFPSLVVRNCLQGHVKNICSLCWDVTGQTIASVSEDCVRVWSLSMDGQCFYEYPSNGKRFQSVIFHPRYRNVLVVGGFQCMELLTLEHGQIHCLSASTSGLSFTGLAACIGDESFASTTTSNDSVGHVKEINSICWDATGKMIASVSEDDVRVWSVLMGRECIYKNPSNGKMFQSVIFHPRHPNVLVIGGFQCLELLIIENGQTSSGRRASDLSITGLAATVAGNEIIASVSNDSVVKIWDEVLVNVIMLFYIIGEYQCCDKLTA* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3547 511 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG-LIKE ISOFORM X1 14 366 - -
Mal7g3547 511 Gene3D - 364 496 IPR015943 GO:0005515
Mal7g3547 511 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 14 366 IPR044716 GO:0003714
Mal7g3547 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 206 - -
Mal7g3547 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 129 161 - -
Mal7g3547 511 SUPERFAMILY WD40 repeat-like 362 489 IPR036322 GO:0005515
Mal7g3547 511 Gene3D - 60 222 IPR015943 GO:0005515
Mal7g3547 511 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 370 486 IPR044716 GO:0003714
Mal7g3547 511 SMART WD40_4 81 119 IPR001680 GO:0005515
Mal7g3547 511 SMART WD40_4 447 487 IPR001680 GO:0005515
Mal7g3547 511 SMART WD40_4 363 401 IPR001680 GO:0005515
Mal7g3547 511 SMART WD40_4 165 204 IPR001680 GO:0005515
Mal7g3547 511 SMART WD40_4 250 288 IPR001680 GO:0005515
Mal7g3547 511 SMART WD40_4 122 161 IPR001680 GO:0005515
Mal7g3547 511 Pfam WD domain, G-beta repeat 172 204 IPR001680 GO:0005515
Mal7g3547 511 Pfam WD domain, G-beta repeat 372 401 IPR001680 GO:0005515
Mal7g3547 511 Pfam WD domain, G-beta repeat 128 161 IPR001680 GO:0005515
Mal7g3547 511 Pfam WD domain, G-beta repeat 257 288 IPR001680 GO:0005515
Mal7g3547 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 213 IPR001680 GO:0005515
Mal7g3547 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 129 161 IPR001680 GO:0005515
Mal7g3547 511 ProSiteProfiles LIS1 homology (LisH) motif profile. 10 42 IPR006594 GO:0005515
Mal7g3547 511 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG-LIKE ISOFORM X1 370 486 - -
Mal7g3547 511 Gene3D - 223 363 IPR015943 GO:0005515
Mal7g3547 511 SUPERFAMILY WD40 repeat-like 94 346 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3547 Mal-Chr7 100577771 100581204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g3547 96 289 U-box Gene Family AT2G33340 24.873 8.38e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3547 - - mtr:MTR_4g088660 414.846