LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal7g3546	ATGTATTTGGGCCCTAAGTCTCTTGTTCTTGATATCTTAGTGTATGATTACCTCAAGAAGAAAGGATTGTCAAACACTGCTATGGTTTTCCAAAATGAATCTCAAATCACTGGACAAACTCCCACTGTATGTGATCAAGAACCACATGGATTCTTGTACAATAACTTTATTAAATTCTGCGATGCAAAGTATAACACTAGGCAACAGATGCCAGCAACTTCCTGTGAGAGTCAGGCCCCGAAAGTTGGTGCTATTATGAAAAATACCCCTCAAATAATTCGGGATGGATATTCTATTCAACACATTGCAAGTTTTACAAACGGTCAAAAGCTTTTGTCTTGCGATTTTTCATCGGATGGAAATATTCTAGCAAGTGGTGGGGAAAGCGGGAAGCCTTTCATTTGCTACATGGATACTCTTGATTCTGTTACTACTTCAGAGACACATTTATCTACCATCTTAGAAGTTCGATTTCAACCAGGATCGACTATATTTGCAACATCTTCTGCTGATAAAACAGTAAAATTATGGGATGCAAACAGACCTGGAAGGTTGTTGTTTGATGCTGTTGGACATAATGGGACAGTTAGATCAATGGACTTCCACCCATTAGGAAGACTTTTTTGCTCGTCCGATATCTGTGATTTAATTGCAGTATGGGATCTCAATCAGCGTGTCGCGATTAACAGCTTGAGGATTGATTCATTTATGAGAGGAAGCCTAGTGAGATTTCAGCCTGGATCTGGGAAGCTTTTGGCAGTTGCTAGTCAAAATGTTATCACCATACTTGAATTTCCGTCTTTGGTTGTTAAGAACCGTCTTCAGGGACATGTCGAAGACATTAAATCTATATGTTGGGATGTCACTGGGGAAATGATAGCCTCTGCCAGTGAAGAAAATGTACGCGCCTGGTCGCTTTTGATGGACGGAAAATGCTCATATGACTATGTATCAAAAGGAAAGAGGTTTCACTCCGTCATATTCCATCCTCAATACCATAACGTCTTAGTTGTTGGTGGTTTTCAGTGCTTGGAATTGTTGGTGCTTGAGACCAGGCTAAAACATATAAAAGGTGCCTCTGATCTTTCAATTATTGGACTAGCAGCTACTACGGCGCAAAGTAAATACATTGCATCAGCTAGTAATGATTCTGTGGTGAAATTATGGAAATGA	1173	0.3981	MYLGPKSLVLDILVYDYLKKKGLSNTAMVFQNESQITGQTPTVCDQEPHGFLYNNFIKFCDAKYNTRQQMPATSCESQAPKVGAIMKNTPQIIRDGYSIQHIASFTNGQKLLSCDFSSDGNILASGGESGKPFICYMDTLDSVTTSETHLSTILEVRFQPGSTIFATSSADKTVKLWDANRPGRLLFDAVGHNGTVRSMDFHPLGRLFCSSDICDLIAVWDLNQRVAINSLRIDSFMRGSLVRFQPGSGKLLAVASQNVITILEFPSLVVKNRLQGHVEDIKSICWDVTGEMIASASEENVRAWSLLMDGKCSYDYVSKGKRFHSVIFHPQYHNVLVVGGFQCLELLVLETRLKHIKGASDLSIIGLAATTAQSKYIASASNDSVVKLWK*	391

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal7g3546	390	ProSiteProfiles	Trp-Asp (WD) repeats profile.	374	390	IPR001680	GO:0005515
	Mal7g3546	390	SUPERFAMILY	WD40 repeat-like	110	390	IPR036322	GO:0005515
	Mal7g3546	390	Pfam	LisH	10	34	IPR006594	GO:0005515
	Mal7g3546	390	SMART	WD40_4	350	390	IPR001680	GO:0005515
	Mal7g3546	390	SMART	WD40_4	139	178	IPR001680	GO:0005515
	Mal7g3546	390	SMART	WD40_4	267	305	IPR001680	GO:0005515
	Mal7g3546	390	SMART	WD40_4	182	221	IPR001680	GO:0005515
	Mal7g3546	390	SMART	WD40_4	98	138	IPR001680	GO:0005515
	Mal7g3546	390	PANTHER	TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8	14	390	IPR044716	GO:0003714
	Mal7g3546	390	SMART	Lish	6	38	IPR006594	GO:0005515
	Mal7g3546	390	ProSiteProfiles	Trp-Asp (WD) repeats profile.	189	230	IPR001680	GO:0005515
	Mal7g3546	390	PANTHER	TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG-LIKE ISOFORM X1	14	390	-	-
	Mal7g3546	390	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	146	178	-	-
	Mal7g3546	390	ProSiteProfiles	Trp-Asp (WD) repeats profile.	146	178	IPR001680	GO:0005515
	Mal7g3546	390	ProSiteProfiles	LIS1 homology (LisH) motif profile.	6	38	IPR006594	GO:0005515
	Mal7g3546	390	Gene3D	-	239	390	IPR015943	GO:0005515
	Mal7g3546	390	Gene3D	-	93	238	IPR015943	GO:0005515
	Mal7g3546	390	Gene3D	-	6	58	-	-
	Mal7g3546	390	Pfam	WD domain, G-beta repeat	145	178	IPR001680	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal7g3546	Mal-Chr7	100568213	100571399	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal7g3546	106	306	U-box Gene Family	AT2G33340	26.570	2.40e-13	69.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal7g3546	-		-	mtr:MTR_4g088660	429.483