Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3544 ATGGCCATTATTTGTGTACAGAGGCAGCCAGCGCCGGTTTTGGTGGTTTTATCCCGTTTTCGAATCTTTCTACATGATTACCTCAAGAAGAAAGGATTGTCAAAAACTGCTGAGATTTTCCAAAATGAAGCTCAAGTTACTGGACAAACTCCTGCTGAATTTGATCAAGAACCACATGGCTTCTTGTATGATTTCTGGACCATATTCTATGACAAGTATAATAACTCTATGCTTCAGATGCCAGGAACTTCCAGTCAGAATTTTCAAAGCGGTCAGACCCTTTTGTCCTGCGATTTTTCATCAGATGGAAAGATTGTAGCAGGTGGTGGGATTGGGACAAAGCCTCTCATTTGCTACATCAACACTCGTCGTTCTGTTACTACATCAGAGGCACATTTATCTAGCATCTTAGAAGTTAGATTTCAATCAGGATCACCTATATTTGCAACTTCTTCTGCTGATAGAACAGTAAAACTATGGGATGCAAAAAGACCTGAGAGAGCGTTGGTTGATCTTGCTGGGCATAAAGGGTTTGTAAGATCATTGGACTTCCACCCATTACGAGAAATTCTTTGCTCATCCGATACCCGTGATGTAATTAATGTATGGGATCTCAAACAGTGTGTCATGATTAACAACTTTAAGAAAGGTGGAAGCCAAGTGAGATTTCAGCCTGGATCTGGGACGCTTTTTGCAGTTGCTAATCGAAATGTTATCACCATATTGGATACTCAGGATTTTGGTGTTTTTATCCAACTTAAGGAACACGTCAAAGACATTAATTCCATATGTTGGGATGTCACTGGGGAAATGATTGCCTCTGTCAGTGAAGATGATGTACGTGTTTGGTCGGTTTTTATGGGGAAAGAATCCATATATAAGTATCCATCAAATGGGAAGAGATTTCAGTCCGTCGTATTCCATCCTCGATACCCTAACGTCTTAGTTATTGGTGGTTTTCGGTGCTTGGAATTGTTGATTCTTGAGAATGGCCAAAGCCAAACACATAGTAGTATACATGCCTCTGACTTATCAATTACTGGACTAGCAGTGGCAAGAAATAAAACCATTGCATCAGCTAGCAATGATTCTGTGGTGAAGATATGGAAATGA 1113 0.4025 MAIICVQRQPAPVLVVLSRFRIFLHDYLKKKGLSKTAEIFQNEAQVTGQTPAEFDQEPHGFLYDFWTIFYDKYNNSMLQMPGTSSQNFQSGQTLLSCDFSSDGKIVAGGGIGTKPLICYINTRRSVTTSEAHLSSILEVRFQSGSPIFATSSADRTVKLWDAKRPERALVDLAGHKGFVRSLDFHPLREILCSSDTRDVINVWDLKQCVMINNFKKGGSQVRFQPGSGTLFAVANRNVITILDTQDFGVFIQLKEHVKDINSICWDVTGEMIASVSEDDVRVWSVFMGKESIYKYPSNGKRFQSVVFHPRYPNVLVIGGFRCLELLILENGQSQTHSSIHASDLSITGLAVARNKTIASASNDSVVKIWK* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3544 370 Gene3D - 221 370 IPR015943 GO:0005515
Mal7g3544 370 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 21 370 IPR044716 GO:0003714
Mal7g3544 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 339 370 - -
Mal7g3544 370 ProSiteProfiles LIS1 homology (LisH) motif profile. 25 48 IPR006594 GO:0005515
Mal7g3544 370 SUPERFAMILY WD40 repeat-like 94 370 IPR036322 GO:0005515
Mal7g3544 370 Pfam WD domain, G-beta repeat 253 284 IPR001680 GO:0005515
Mal7g3544 370 Pfam WD domain, G-beta repeat 127 161 IPR001680 GO:0005515
Mal7g3544 370 Pfam WD domain, G-beta repeat 334 370 IPR001680 GO:0005515
Mal7g3544 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 129 170 IPR001680 GO:0005515
Mal7g3544 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 370 IPR001680 GO:0005515
Mal7g3544 370 Gene3D - 79 220 IPR015943 GO:0005515
Mal7g3544 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 129 161 - -
Mal7g3544 370 SMART WD40_4 81 121 IPR001680 GO:0005515
Mal7g3544 370 SMART WD40_4 332 370 IPR001680 GO:0005515
Mal7g3544 370 SMART WD40_4 122 161 IPR001680 GO:0005515
Mal7g3544 370 SMART WD40_4 165 204 IPR001680 GO:0005515
Mal7g3544 370 SMART WD40_4 246 284 IPR001680 GO:0005515
Mal7g3544 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 206 IPR001680 GO:0005515
Mal7g3544 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 206 - -
Mal7g3544 370 Pfam LisH 25 44 IPR006594 GO:0005515
Mal7g3544 370 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG-LIKE ISOFORM X1 21 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3544 Mal-Chr7 100551123 100553870 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g3544 104 369 Miscellaneous Gene Families AT5G08390 22.711 1.13e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mal7g3544 WD40 0.057 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3544 - - mtr:MTR_4g088660 509.99