Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3535 ATGGAGACAAGAAGGTCAGAAGGAAAACGGAGTTTGAGGTACAAAGAGGAGGTGAATATTGATCATGAGGAAGAAGAAGAGGAAGAGGAAATGGATTATGAAGAGGAAGAGGATGGTAGAAAGAAGAGGGTAGTGACAGATCTCTATAGCAAGAGAAGTTCCAAAAAAGCTGGAGGCTCAAATAATCCACCATGTTGTCAAGTGGAGAATTGTGATGCTGATCTTAGTGAAGCTAAGCAGTATCATCGGAGACATAAGGTTTGTGAGTATCATGCCAAATCACCTGCCGTACACATTGCAGGGTTGCAGCAAAGGTTTTGTCAGCAATGTAGCAGATTCCATGAGCTATCTGAATTTGATGACTCAAAAAGGAGTTGTAGAAGGCGTTTGGCTGGGCATAATGAGAGGCGTCGCAAAAGTGCAATTGACTATCAAGGAGAATAA 444 0.4234 METRRSEGKRSLRYKEEVNIDHEEEEEEEEMDYEEEEDGRKKRVVTDLYSKRSSKKAGGSNNPPCCQVENCDADLSEAKQYHRRHKVCEYHAKSPAVHIAGLQQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKSAIDYQGE* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3535 147 Pfam SBP domain 66 139 IPR004333 GO:0003677
Mal7g3535 147 Gene3D - 56 127 IPR036893 GO:0003677|GO:0005634
Mal7g3535 147 MobiDBLite consensus disorder prediction 1 62 - -
Mal7g3535 147 MobiDBLite consensus disorder prediction 1 20 - -
Mal7g3535 147 MobiDBLite consensus disorder prediction 21 35 - -
Mal7g3535 147 ProSiteProfiles Zinc finger SBP-type profile. 63 140 IPR004333 GO:0003677
Mal7g3535 147 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 141 IPR044817 GO:0003677
Mal7g3535 147 MobiDBLite consensus disorder prediction 36 50 - -
Mal7g3535 147 PIRSF SBP 1 147 IPR017238 GO:0003677|GO:0003700|GO:0009908
Mal7g3535 147 SUPERFAMILY SBT domain 63 144 IPR036893 GO:0003677|GO:0005634
Mal7g3535 147 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 17 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3535 Mal-Chr7 100471819 100474787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g3535 55 143 SBP-box Gene Family AT2G33810 69.663 4.25e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mal7g3535 SBP 1.3e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g3535 7 100471819 100474787 Mal7g3535 7 100471819 100474787 ECH
Mal4g4055 4 116238354 116240383 Mal7g3535 7 100471819 100474787 ECH
Mal4g1465 4 22329628 22332109 Mal7g3535 7 100471819 100474787 ECH