Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3444 ATGGATTTCCCCAAGAAGCGCAAAACAGAAGAAAACGGCGACACGAATTCACCACCCTCCTCAATCGACGCCGCCGTTACAACCACCCCTCTCACCTCAGACGACATCCGCAAGATTCTCCAACCCTTCACTCAAGAACAACTACTCGACCTTCTCCAATCCGCCTCCCTTCAACATCCCGACGTTCTCGACACCGTTCGCTCCGTCGCCGACCGTGACACCACCCGCCGTAAACTCTTCGTTCGTGGTCTCTCCGGCGAAACCACCACCGACACACTCCGCACCGTTTTCTCTTCCTACGGTGACCTAGACGAAGCGATTGTGATATTCGATAAAGCCACTGGAAGATCTAAGGGTTACGGTTTCGTTGTTTTCCGTCACGTCGACGGTGCTATCTTAGCCCTAAAAGAGCCAAGCAAGAAAATCGATGGAAGAATGACGGTCACGCAGCTTGCGGCGGCGGGTTCTGGTTCGACTGGCGGAGATGTTTCTGCACGTAAGGTGTTTGTAGGAAACGTTCCGTTTGAAGTTTCAGCGGAGAGTTTATTGAGTGAGTTTTCAAAGTATGGTGAAATTGAAGAAGGACCATTAGGGTTTGATAAATCGAGTGGTAAAACAAGAGGTTTTGCTTTCTTTGTGTACAAAACCGAAGAGGGTGCCAGGAATTCCCTTGTAGAGTCTATGAAAACCGTTGATGGGCATCAAGTGATTTGTAAGCTGGCTGTGGATAACAAAAAGACCAAGCCTGTGGGCCAAAACCCATCGGGCTTTCCGGTGGATAATGCTAATGTTAATTATCATGCTCCTAATGCTGGTATGATTCCGCAGTATGGTGCTCCTCCTAATAGTTATGGGCAACCTTATGGTAATCAGGTTCCTGCTGCTGGTGGGTATGGGCCTGTTCCTCAGTATGGTGGGCCTGTTCCTGGACCTGGGCCTGTTAATGGGCCAAGAGCGCCTCCGGCTTCTGTTGGTGGATACCCTGATGGTTCGCAGTATGGTTACCCGCCACAATCTATGCCGGTGCAGAGACCTCCTCCAGGAGGAATGTACCAGCCTTATTATTGA 1068 0.5028 MDFPKKRKTEENGDTNSPPSSIDAAVTTTPLTSDDIRKILQPFTQEQLLDLLQSASLQHPDVLDTVRSVADRDTTRRKLFVRGLSGETTTDTLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVFRHVDGAILALKEPSKKIDGRMTVTQLAAAGSGSTGGDVSARKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKSSGKTRGFAFFVYKTEEGARNSLVESMKTVDGHQVICKLAVDNKKTKPVGQNPSGFPVDNANVNYHAPNAGMIPQYGAPPNSYGQPYGNQVPAAGGYGPVPQYGGPVPGPGPVNGPRAPPASVGGYPDGSQYGYPPQSMPVQRPPPGGMYQPYY* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3444 355 MobiDBLite consensus disorder prediction 282 355 - -
Mal7g3444 355 CDD RRM_RBM24_RBM38_like 77 152 - -
Mal7g3444 355 SUPERFAMILY RNA-binding domain, RBD 163 257 IPR035979 GO:0003676
Mal7g3444 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 145 IPR000504 GO:0003723
Mal7g3444 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 233 IPR000504 GO:0003723
Mal7g3444 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 248 IPR000504 GO:0003723
Mal7g3444 355 Gene3D - 161 250 IPR012677 -
Mal7g3444 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 154 IPR000504 GO:0003723
Mal7g3444 355 PANTHER GEO13361P1-RELATED 1 340 - -
Mal7g3444 355 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 340 - -
Mal7g3444 355 MobiDBLite consensus disorder prediction 304 318 - -
Mal7g3444 355 MobiDBLite consensus disorder prediction 339 355 - -
Mal7g3444 355 MobiDBLite consensus disorder prediction 1 26 - -
Mal7g3444 355 SUPERFAMILY RNA-binding domain, RBD 68 152 IPR035979 GO:0003676
Mal7g3444 355 SMART rrm1_1 78 150 IPR000504 GO:0003723
Mal7g3444 355 SMART rrm1_1 167 239 IPR000504 GO:0003723
Mal7g3444 355 Gene3D - 36 160 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3444 Mal-Chr7 99513143 99514210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g3444 149 241 C2H2 Transcription Factor Family AT2G19380 34.409 2.88e-12 65.9