Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3388 ATGGCTGCACAAACCAACGGTGGAGATCTGAGTCAGAACTCTCAGAACCAAAGCTCTCAGCAGCAGCAACATCAGCAACAGTGGGCTCAGCAGCAGCCACATCAGTATCAACAGCAATGGATGTCTATGCAGTATCCAGCTACTGCTATGGCTATGATGCAGCAGCAGATGATGATGTATCCTCAGCATTATATGCCGTATGTTCATCCTCATCATTATCAGCAGCCGCCTCATCAACAACAAGTATCGCCGCCGCCGGCGCAGAGTCATCATGGCGGCCATCACCAGCAGCAGCATCAATATCAGCAGCAGCAGCATCAGCAGAAACAGTTGGCGCCTGAAGAGATCAGGACGATCTGGCTTGGTGACCTTCATCATTGGATGGATGAGACTTTTCTTCATAACTGCTTTGCTCACACCGGAGAGGTTGTATCGGCCAAGGTAATACGTAATAAACAAACTGGTCAGTCGGAGGGATATGGATTTGTCGAGTTCTATACGCGAGCAATGGCTGAGAAAGTCTTGCAAAACTTCAATGGAACTATGATGCCAAATACGGATCAGGCGTTTCGTCTGAATTGGGCTACATTCAGCGCTGCTGGTGGTGGTAGTGGTGAAAGGCGCTCTTCTGAGGCTACTTCTGATCTCTCTGTATTTGTGGGAGACTTGGCCATAGATGTTACTGATGCTATGCTGCAAGAGACGTTTGCTAGCAAATTCTCATCAATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACCGGTCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAGTGAAAGGACTAGAGCAATGACTGAAATGAACGGCGTTTATTGTTCTAGCAGGCCTATGCGAGTAGGTGTTGCAACACCCAAAAAAACTTATGGCAATCCACAACAATATTCTTCGCAAGCTGTTGTGTTGGCTGGCGGTGGTGGACACTCCAATGGAGCTGTGGCCCAAGGTTCCCAATCTGAAGGGGATTCTAACAACACAACTATATTTGTTGGAGGGCTTGACTCTGACATCAGTGACGAGGATCTCAGACAACCATTTTTGCAATTTGGTGATGTTATCTCTGTGAAAATTCCAGTCGGTAAAGGATGTGGTTTTGTTCAACTTGCTGACAGAAAGAATGCTGAGGAAGCAATTCAGGGATTGAATGGAACAGTTATTGGAAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGGAACGACTCTAATGGTTATGGAGGTCATGGATATGGAGGCCATGGATATGGAGGTCACGGATATGCTGCTAGACAGAATCAAGATATAGCTATGCAACCTGCTGCTGCAGTTCAAGGGGCTTCCTAA 1371 0.4654 MAAQTNGGDLSQNSQNQSSQQQQHQQQWAQQQPHQYQQQWMSMQYPATAMAMMQQQMMMYPQHYMPYVHPHHYQQPPHQQQVSPPPAQSHHGGHHQQQHQYQQQQHQQKQLAPEEIRTIWLGDLHHWMDETFLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNFNGTMMPNTDQAFRLNWATFSAAGGGSGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGGGHSNGAVAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVISVKIPVGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNKHWRNDSNGYGGHGYGGHGYGGHGYAARQNQDIAMQPAAAVQGAS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3388 456 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 26 455 - -
Mal7g3388 456 SUPERFAMILY RNA-binding domain, RBD 214 321 IPR035979 GO:0003676
Mal7g3388 456 CDD RRM2_SECp43_like 215 294 - -
Mal7g3388 456 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 26 455 - -
Mal7g3388 456 SUPERFAMILY RNA-binding domain, RBD 90 198 IPR035979 GO:0003676
Mal7g3388 456 Gene3D - 198 304 IPR012677 -
Mal7g3388 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 295 IPR000504 GO:0003723
Mal7g3388 456 SMART rrm1_1 118 193 IPR000504 GO:0003723
Mal7g3388 456 SMART rrm1_1 337 404 IPR000504 GO:0003723
Mal7g3388 456 SMART rrm1_1 217 291 IPR000504 GO:0003723
Mal7g3388 456 MobiDBLite consensus disorder prediction 74 109 - -
Mal7g3388 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 197 IPR000504 GO:0003723
Mal7g3388 456 CDD RRM3_NGR1_NAM8_like 335 406 - -
Mal7g3388 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 338 401 IPR000504 GO:0003723
Mal7g3388 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 287 IPR000504 GO:0003723
Mal7g3388 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Mal7g3388 456 Gene3D - 116 196 IPR012677 -
Mal7g3388 456 MobiDBLite consensus disorder prediction 1 31 - -
Mal7g3388 456 SUPERFAMILY RNA-binding domain, RBD 327 435 IPR035979 GO:0003676
Mal7g3388 456 CDD RRM1_SECp43_like 118 198 - -
Mal7g3388 456 MobiDBLite consensus disorder prediction 70 109 - -
Mal7g3388 456 Gene3D - 318 443 IPR012677 -
Mal7g3388 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 336 408 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3388 Mal-Chr7 98695500 98699217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g3388 119 415 Eukaryotic Initiation Factors Gene Family AT4G34110 29.739 3.10e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3388 - - mtr:MTR_4g086600 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g3388 7 98695500 98699217 Mal7g3388 7 98695500 98699217 ECH