Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mal7g3388 | ATGGCTGCACAAACCAACGGTGGAGATCTGAGTCAGAACTCTCAGAACCAAAGCTCTCAGCAGCAGCAACATCAGCAACAGTGGGCTCAGCAGCAGCCACATCAGTATCAACAGCAATGGATGTCTATGCAGTATCCAGCTACTGCTATGGCTATGATGCAGCAGCAGATGATGATGTATCCTCAGCATTATATGCCGTATGTTCATCCTCATCATTATCAGCAGCCGCCTCATCAACAACAAGTATCGCCGCCGCCGGCGCAGAGTCATCATGGCGGCCATCACCAGCAGCAGCATCAATATCAGCAGCAGCAGCATCAGCAGAAACAGTTGGCGCCTGAAGAGATCAGGACGATCTGGCTTGGTGACCTTCATCATTGGATGGATGAGACTTTTCTTCATAACTGCTTTGCTCACACCGGAGAGGTTGTATCGGCCAAGGTAATACGTAATAAACAAACTGGTCAGTCGGAGGGATATGGATTTGTCGAGTTCTATACGCGAGCAATGGCTGAGAAAGTCTTGCAAAACTTCAATGGAACTATGATGCCAAATACGGATCAGGCGTTTCGTCTGAATTGGGCTACATTCAGCGCTGCTGGTGGTGGTAGTGGTGAAAGGCGCTCTTCTGAGGCTACTTCTGATCTCTCTGTATTTGTGGGAGACTTGGCCATAGATGTTACTGATGCTATGCTGCAAGAGACGTTTGCTAGCAAATTCTCATCAATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACCGGTCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAGTGAAAGGACTAGAGCAATGACTGAAATGAACGGCGTTTATTGTTCTAGCAGGCCTATGCGAGTAGGTGTTGCAACACCCAAAAAAACTTATGGCAATCCACAACAATATTCTTCGCAAGCTGTTGTGTTGGCTGGCGGTGGTGGACACTCCAATGGAGCTGTGGCCCAAGGTTCCCAATCTGAAGGGGATTCTAACAACACAACTATATTTGTTGGAGGGCTTGACTCTGACATCAGTGACGAGGATCTCAGACAACCATTTTTGCAATTTGGTGATGTTATCTCTGTGAAAATTCCAGTCGGTAAAGGATGTGGTTTTGTTCAACTTGCTGACAGAAAGAATGCTGAGGAAGCAATTCAGGGATTGAATGGAACAGTTATTGGAAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGGAACGACTCTAATGGTTATGGAGGTCATGGATATGGAGGCCATGGATATGGAGGTCACGGATATGCTGCTAGACAGAATCAAGATATAGCTATGCAACCTGCTGCTGCAGTTCAAGGGGCTTCCTAA | 1371 | 0.4654 | MAAQTNGGDLSQNSQNQSSQQQQHQQQWAQQQPHQYQQQWMSMQYPATAMAMMQQQMMMYPQHYMPYVHPHHYQQPPHQQQVSPPPAQSHHGGHHQQQHQYQQQQHQQKQLAPEEIRTIWLGDLHHWMDETFLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNFNGTMMPNTDQAFRLNWATFSAAGGGSGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGGGHSNGAVAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVISVKIPVGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNKHWRNDSNGYGGHGYGGHGYGGHGYAARQNQDIAMQPAAAVQGAS* | 457 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mal7g3388 | 456 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 26 | 455 | - | - | |
Mal7g3388 | 456 | SUPERFAMILY | RNA-binding domain, RBD | 214 | 321 | IPR035979 | GO:0003676 | |
Mal7g3388 | 456 | CDD | RRM2_SECp43_like | 215 | 294 | - | - | |
Mal7g3388 | 456 | PANTHER | POLYADENYLATE-BINDING PROTEIN RBP47B | 26 | 455 | - | - | |
Mal7g3388 | 456 | SUPERFAMILY | RNA-binding domain, RBD | 90 | 198 | IPR035979 | GO:0003676 | |
Mal7g3388 | 456 | Gene3D | - | 198 | 304 | IPR012677 | - | |
Mal7g3388 | 456 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 216 | 295 | IPR000504 | GO:0003723 | |
Mal7g3388 | 456 | SMART | rrm1_1 | 118 | 193 | IPR000504 | GO:0003723 | |
Mal7g3388 | 456 | SMART | rrm1_1 | 337 | 404 | IPR000504 | GO:0003723 | |
Mal7g3388 | 456 | SMART | rrm1_1 | 217 | 291 | IPR000504 | GO:0003723 | |
Mal7g3388 | 456 | MobiDBLite | consensus disorder prediction | 74 | 109 | - | - | |
Mal7g3388 | 456 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 117 | 197 | IPR000504 | GO:0003723 | |
Mal7g3388 | 456 | CDD | RRM3_NGR1_NAM8_like | 335 | 406 | - | - | |
Mal7g3388 | 456 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 338 | 401 | IPR000504 | GO:0003723 | |
Mal7g3388 | 456 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 218 | 287 | IPR000504 | GO:0003723 | |
Mal7g3388 | 456 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 119 | 186 | IPR000504 | GO:0003723 | |
Mal7g3388 | 456 | Gene3D | - | 116 | 196 | IPR012677 | - | |
Mal7g3388 | 456 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Mal7g3388 | 456 | SUPERFAMILY | RNA-binding domain, RBD | 327 | 435 | IPR035979 | GO:0003676 | |
Mal7g3388 | 456 | CDD | RRM1_SECp43_like | 118 | 198 | - | - | |
Mal7g3388 | 456 | MobiDBLite | consensus disorder prediction | 70 | 109 | - | - | |
Mal7g3388 | 456 | Gene3D | - | 318 | 443 | IPR012677 | - | |
Mal7g3388 | 456 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 336 | 408 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mal7g3388 | Mal-Chr7 | 98695500 | 98699217 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mal7g3388 | 119 | 415 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 29.739 | 3.10e-25 | 107 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mal7g3388 | - | - | mtr:MTR_4g086600 | 666.381 |