Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3342 ATGCGTGGCGTTTTGGAACCGTTAGATTTAGGGGTTCAAATTCCTTACCACTTCAGATGTCCAATCTCGCTCGAGCTGATGCGAGACCCGGTGACAGTCTCCACCGGTCAAACCTACGACCGCATCAGCATCGAGTCGTGGGTTAACACCGGCAACACCACGTGTCCAGTTACCAGAGCCAATCTCACAGATTTCACCTTCATACCAAATCACACTCTCCGCCGTTTAATCCAAGATTGGTGCGTTTCCAACCGCGCTTTTGGAGTTCAGCGGATTCCAACACCCAAACAACCCGCAGACCCTGCTCTTGTTCGTTCTTTGCTTAACCAAATTTCTTCCCATTCTGCCCCTACTCCGTTACGTCTCAACTCGCTCCGGCGACTCAGATCGTTAACTCGTGACTCGGATTATAACCGTTCTCTTATATCCTCACTCAACGTTCGGAATATTCTGTTACCGATTCTTTTTAACAAAGGTTTAGATGAGTTGAAATATGAATCACTCGCTTTGATTGTTCTTTTTCCACTCAGTGAGTCAGAATGCACTTCACTCGCTTCAGATTCAGATAAGATTAACTACCTTACAAGTCTTCTTTCACACGATTTGTTCGATGTCCGAGTTAACTCGGCGGCGCTTATTGAGATTATTGTTGCCGGAACTCACTCGCCGGAGATTCGCCTTCAGGTGAGTAATGTCGACGGGATCTACGACGGTGTAGTGGAGATACTTCGAAATCCGATCTCGTATCCTCGTGCACTTAAGGTTGGGATTAAAGCTTTGTTCGCTTTGTGTCTGGTGAAACAAACGCGCCACCGTGCTGTTTCCGCCGGTGCGCCGGTGGTACTTATTGATCGGCTTGCTGATTTTGAGAAGTGTGATGCGGAGAGAGCGTTAGCGACGGTGGAGTTGTTATGCCGTGTTCCGGCGGGATGTGCGGCGTTTGCCGGTCATGCACTCACGGTGCCGATGCTTGTGAAGATAATATTAAAGATATCGGATCGTGCGACGGAATACGCCGCCGGTGCGCTTATGGCGTTGTGTTCGGAATCGGAACGGTGTCAACGAGAGGCGGTTGCGGCGGGGGTGCTGACTCAGCTTTTGCTTCTGGTGCAGAGTGATTGTACAGAAAGAGCGAAGAGGAAGGCGCAACTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCTCAAGATTCCATTGGAAATTCTGATGATTTTGCATGCAGACATTTTGACTGA 1233 0.4923 MRGVLEPLDLGVQIPYHFRCPISLELMRDPVTVSTGQTYDRISIESWVNTGNTTCPVTRANLTDFTFIPNHTLRRLIQDWCVSNRAFGVQRIPTPKQPADPALVRSLLNQISSHSAPTPLRLNSLRRLRSLTRDSDYNRSLISSLNVRNILLPILFNKGLDELKYESLALIVLFPLSESECTSLASDSDKINYLTSLLSHDLFDVRVNSAALIEIIVAGTHSPEIRLQVSNVDGIYDGVVEILRNPISYPRALKVGIKALFALCLVKQTRHRAVSAGAPVVLIDRLADFEKCDAERALATVELLCRVPAGCAAFAGHALTVPMLVKIILKISDRATEYAAGALMALCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGNSDDFACRHFD* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3342 410 PANTHER WDSAM1 PROTEIN 4 406 IPR045185 GO:0061630
Mal7g3342 410 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 406 - -
Mal7g3342 410 CDD RING-Ubox_PUB 18 59 IPR045210 -
Mal7g3342 410 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Mal7g3342 410 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Mal7g3342 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Mal7g3342 410 SUPERFAMILY RING/U-box 12 89 - -
Mal7g3342 410 Gene3D - 90 401 IPR011989 -
Mal7g3342 410 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Mal7g3342 410 SUPERFAMILY ARM repeat 103 389 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3342 Mal-Chr7 98173648 98174880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g3342 1 404 U-box Gene Family AT1G49780 64.891 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3342 - - var:108341190 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g3342 7 98173648 98174880 Mal7g3342 7 98173648 98174880 ECH