Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3340 ATGGCCATGAATGTAGATCATGATCAAGGCGTTGAGACATGTTTCCTTTGGGAAAATCATCCTTGGGTTGATCTCCCAAATTCTAATAACTTAGGTGAGAGTAGCAACCAAAGATTAGGCAAAAAACCATTGAACCAGAAAGAAGGAATTAATGAAGGAGAAGCTCCCGTGAGTAAGAAAAGAAATCGTGGTGGGGTTGTGATTAGAAGTGAGAATAATATAACAAATGATGATGGTGAAAGAAAAGATAGAAAGCTTCGTGATTCTGATCATGAACAGCACATATTGACTGAAAGAGAAAGGAGAAAGAAAATGAGGGACATGTTCGATAGCCTTCATGCCTTGCTTCCTGATCTTCCTTCTAAGGCTGATAAATCAACCATTGTTGATGCTGCAGTGAAGCACATAAAAAATCTACAAGAAATTAAGGAAAACCTAGAAAAGAAGAAGCAAGAAAGACTCAAATCTGTATCTCCAATTGGGAGTGAGTCATCTTTGATCAACTCACAGTGGCATCCCTATGAATCAAGGGAAGAATTCATAGCTGATCAAGGAGGATCCTCAAGTCATAATAATAACAACTTGTCTAGTGCAATTGTAACTTCAAACCCTTCAAATGCATTTTCAACACCTCCAACTCAACAAGTTGCTTTTCAAACATGGTCTTCTCAAAATGTTGTCTTGAACATTTGTGGTGTTGATGCACAATTTTGCATTTGTGCAACTAAGAAACCTGGTCTCTTGACAACAATTGCTTTTGTGTTGGAGAAACATAGGATTGATGTTGTGTCTGCCAACATTATGCGCAATGGAAATGGAAGCTTCTACATGTTTATGGCCCATGCAAAAGAAGCTTCACATGACGCAAATTCAGTGGAGGAAATTTACAAGCCAGCAGCTAGAGAAATTATGATGTGGATCTCTTAA 927 0.3819 MAMNVDHDQGVETCFLWENHPWVDLPNSNNLGESSNQRLGKKPLNQKEGINEGEAPVSKKRNRGGVVIRSENNITNDDGERKDRKLRDSDHEQHILTERERRKKMRDMFDSLHALLPDLPSKADKSTIVDAAVKHIKNLQEIKENLEKKKQERLKSVSPIGSESSLINSQWHPYESREEFIADQGGSSSHNNNNLSSAIVTSNPSNAFSTPPTQQVAFQTWSSQNVVLNICGVDAQFCICATKKPGLLTTIAFVLEKHRIDVVSANIMRNGNGSFYMFMAHAKEASHDANSVEEIYKPAAREIMMWIS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3340 308 Coils Coil 129 156 - -
Mal7g3340 308 CDD ACT_UUR-ACR-like 239 272 - -
Mal7g3340 308 Gene3D - 77 156 IPR036638 GO:0046983
Mal7g3340 308 MobiDBLite consensus disorder prediction 182 206 - -
Mal7g3340 308 SMART finulus 95 145 IPR011598 GO:0046983
Mal7g3340 308 CDD bHLH_AtbHLH_like 94 147 IPR045239 -
Mal7g3340 308 Pfam Helix-loop-helix DNA-binding domain 92 140 IPR011598 GO:0046983
Mal7g3340 308 MobiDBLite consensus disorder prediction 45 59 - -
Mal7g3340 308 MobiDBLite consensus disorder prediction 28 94 - -
Mal7g3340 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 89 139 IPR011598 GO:0046983
Mal7g3340 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 161 IPR036638 GO:0046983
Mal7g3340 308 MobiDBLite consensus disorder prediction 28 42 - -
Mal7g3340 308 MobiDBLite consensus disorder prediction 74 94 - -
Mal7g3340 308 PANTHER TRANSCRIPTION FACTOR BHLH95 12 306 - -
Mal7g3340 308 PANTHER - 12 306 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3340 Mal-Chr7 98126665 98129019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g3340 82 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.965 1.33e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal7g3340 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3340 - - mtr:MTR_4g085700 474.552