Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3333 ATGGCCCAGGTTCAGGTTCAGCCTCAGAATGCGATGACCGGTCCTAACGGTGGTGCTGCGGCGGCGGCTGCAGTGGCGGCCGGTGGTGGAAATTTCGTGACGACGTCGCTTTACGTTGGAGATCTTGATATGAATGTGACGGATTCTCAGCTGTATGATTTGTTCAATCAATTGGGACAGGTTGTGAGTGTTAGGGTTTGCAGGGATTTGACTACGAGGAGGTCACTTGGTTATGGTTATGTTAACTATAGCAACCCACAAGATGCTGCCAGAGCATTGGATGTTCTGAACTTCACTCCTCTCAACAACAGGCCCATTCGTATTATGTACTCACATCGCGATCCTAGTATCCGCAAGAGTGGCCAAGGAAATATATTTATCAAGAATTTGGACAGGGCAATTGACCATAAGGCGTTGCATGATACCTTTTCTACATTTGGGAATATCCTTTCTTGCAAGGTAGCTGTCGATGGATCTGGCCAATCAAAAGGCTACGGCTTTGTACAATTTGATACTGAGGAGGCTGCTCAAAAAGCTATTGAAAAGCTTAATGGTATGCTGTTGAATGATAAGCAAGTGTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGGGAGAGTACAGCTGACAAGGCCAAATTCAACAATGTTTTTGTTAAGAATCTATCTGAATCAACCACTGACGATGAGTTGAAGAAGATTTTTGGTGAATTTGGAACAATTACCAGTGCTGTAGTTATGAGGGATGGGGATGGGAAATCAAAGTGCTTTGGGTTTGTAAACTTTGAGAGTACCGATGATGCTGCTAGGGCTGTTGAGGCTCTTAATGGGAAAAAAATTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGCATGAACTGAAAGTTAAATTTGAGCAGAGCATGAAAGAAGCTGCAGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTGGACGATAGCATTGCTGATGAAAAACTTAAGGAGCTGTTCTCCTCTTATGGTACAATTACCTCCTGCAAGGTAATGAGAGACCCCAATGGCATAAGTCGAGGATCTGGGTTTGTTGCATTCTCTACTCCTGAGGAGGCATCTAGAGCACTCTTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTTGCCCAGCGAAAAGAAGATAGAAGAGCTAGGCTGCAGGCTCAATTTGCTCAAATGCGTCCTGTCTCGATGCCACCATCTGTTGCTCCTCGCATGCCTATGTATCCTCCTGGTGGTCCAGGTATGGGTCAACAAATATTTTATGGTCAAGGCCCTCCTGCAATGATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAACTTGTGCCTGGAATGAGGCCTGGTGGAGCTCCTGTGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGACAGCAAGGGCAGCGTCCTGGTGGAAGACGTGGAGGTGGAGTCCAGCAGTCTCAGCAGCCAGTTCCGCTTATGCCACAACAGATGCTCCCTAGGGGTCGTGTGTATCGCTATCCTCCTGGTAGGGGCATGCCTGATGGGCCCATGCCTGGAGTTGCTGGAGGCATGTATTCTGTTCCTTATGATGTGGGTGGGATGCCCCTTCGTGATGCGTCACTTTCCCAGCAAATTCCAATTGGTGCTTTGGCTTCTCATCTGGCTAATGCATCTCCAGAGCAGCAGAGAACGATGCTGGGTGAAAACCTTTACCCCCTTGTGGAACAATTGGAGCCTGACAATGCTGCCAAAGTTACTGGCATGCTTCTGGAGATGGACCAGACTGAAGTTCTTCACTTGCTTGAGTCACCAGAGGCCCTGAAAGCAAAGGTGGCAGAGGCAATGGACGTCCTTAGGAATGTTGCACAGCAGCAGGCTGGTGGTGCTGCTGACCAGCTGTCTTCATTGTCACTTAATGACAACCTTGCTTCTTAA 1968 0.4715 MAQVQVQPQNAMTGPNGGAAAAAAVAAGGGNFVTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDDELKKIFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKVKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVSMPPSVAPRMPMYPPGGPGMGQQIFYGQGPPAMIPSQPGFGYQQQLVPGMRPGGAPVPNFFVPMVQQGQQGQRPGGRRGGGVQQSQQPVPLMPQQMLPRGRVYRYPPGRGMPDGPMPGVAGGMYSVPYDVGGMPLRDASLSQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGAADQLSSLSLNDNLAS* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3333 655 SMART poly_2 569 632 IPR002004 GO:0003723
Mal7g3333 655 Pfam Poly-adenylate binding protein, unique domain 565 629 IPR002004 GO:0003723
Mal7g3333 655 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 557 634 IPR002004 GO:0003723
Mal7g3333 655 SUPERFAMILY RNA-binding domain, RBD 312 412 IPR035979 GO:0003676
Mal7g3333 655 SUPERFAMILY PABC (PABP) domain 498 647 IPR036053 GO:0003723
Mal7g3333 655 SMART rrm1_1 318 390 IPR000504 GO:0003723
Mal7g3333 655 SMART rrm1_1 215 287 IPR000504 GO:0003723
Mal7g3333 655 SMART rrm1_1 36 109 IPR000504 GO:0003723
Mal7g3333 655 SMART rrm1_1 124 196 IPR000504 GO:0003723
Mal7g3333 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 387 IPR000504 GO:0003723
Mal7g3333 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Mal7g3333 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Mal7g3333 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 284 IPR000504 GO:0003723
Mal7g3333 655 SUPERFAMILY RNA-binding domain, RBD 35 204 IPR035979 GO:0003676
Mal7g3333 655 PANTHER POLYADENYLATE-BINDING PROTEIN 24 639 - -
Mal7g3333 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 291 IPR000504 GO:0003723
Mal7g3333 655 CDD RRM1_I_PABPs 36 115 - -
Mal7g3333 655 Gene3D - 124 196 IPR012677 -
Mal7g3333 655 Gene3D - 199 298 IPR012677 -
Mal7g3333 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Mal7g3333 655 CDD RRM3_I_PABPs 213 292 - -
Mal7g3333 655 Gene3D - 299 402 IPR012677 -
Mal7g3333 655 MobiDBLite consensus disorder prediction 479 500 - -
Mal7g3333 655 Gene3D - 32 123 IPR012677 -
Mal7g3333 655 Gene3D - 553 636 - -
Mal7g3333 655 CDD RRM4_I_PABPs 316 394 - -
Mal7g3333 655 CDD RRM2_I_PABPs 121 197 IPR045305 -
Mal7g3333 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 195 IPR000504 GO:0003723
Mal7g3333 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723
Mal7g3333 655 SUPERFAMILY RNA-binding domain, RBD 211 296 IPR035979 GO:0003676
Mal7g3333 655 PANTHER RNA BINDING PROTEIN 24 639 - -
Mal7g3333 655 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 36 630 IPR006515 GO:0003723
Mal7g3333 655 SMART rrm2_1 124 196 IPR003954 GO:0003676
Mal7g3333 655 SMART rrm2_1 318 390 IPR003954 GO:0003676
Mal7g3333 655 SMART rrm2_1 36 109 IPR003954 GO:0003676
Mal7g3333 655 SMART rrm2_1 215 287 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3333 Mal-Chr7 98023928 98029300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g3333 34 653 Eukaryotic Initiation Factors Gene Family AT1G49760 76.190 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3333 K13126 - gmx:100813735 1087.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g3333 7 98023928 98029300 Mal7g3333 7 98023928 98029300 ECH
Mal2g1185 2 13926798 13934135 Mal7g3333 7 98023928 98029300 ECH