Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3296 ATGGGTCGTGTTAAACTTGAGATAAAAAGAATAGAGAACAATACGAATCGACAAGTTACGTATTCAAAGCGTAGAAATGGTCTCATCAAGAAAGCTTATGAATTATCAATCCTTTGTGATATTGATATTGCCCTTATAATGTTTTCTCCATCAAATCGTCTTAATCATTTTTCCGGTAAAAGAAGGATAGAGGATGTTTTAACTCGTTACATTAATATTCCTGACCAAGAAAGAGATAGTGCTGTAAGTTTTCCTGAGATACCCTACCGGAGGGGTATTCAGAACAAGGAGTATTTGCTCAGGGTACTTCAGCAGTTGAGGAGTGAAAATGACATAGCCCTTCATATGTCCAATCCTGGAGACATTAACTCTGAGATTGAGGATCTTCAGCAAGACGTTGGTAGATTACAACAACAACTTCAAATGGTAGAGGAGCAGATAAGGATATACGAACCTGACCCATTAAAGATGACATCTATAGCAGAGCTTGAAACCGGAGAAAAAAACGTAGTAGAAACCTTGGCACGTGTCATGGAGAGAAAGGAAACTTTGTTGAACAACCAAATATCTTCGTATGATCCATCAGCTATTCAGGGAATGCCGACCTCTTTTGAGAATGTAGGTTGGCTGCCGGATGGTAGTCAGACTCAAAACCATCCCCACATTTTTGATGCATCAGCTCCTATGGATCCTCTCAGGGATTTGTCCTCTACTGTGTATGGTTCATTTTCACAAGGGACGAGTTCAAATGTTGTTGATCCACGTAGTATAGGAGATTGCCACGTGGCAAATCCAAACGATGGAAACATTCAAGCATGGCCTCAAGGATACACATTATATCCTCCTCCTCCTCATCAGCATATTCAACATGACATGGTGGGAACTGATCATCATCATCATCACCACATCCAAGATATGATGCCACATGGACAAATGAACATGCCAATCACTGCCTCACAAGTTGAACCACCTAAAATTGAATTAACAGAATATGATCAATGTAAACAACCTAATAATCATCAGCATCATGGTCAATGA 1038 0.3988 MGRVKLEIKRIENNTNRQVTYSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLNHFSGKRRIEDVLTRYINIPDQERDSAVSFPEIPYRRGIQNKEYLLRVLQQLRSENDIALHMSNPGDINSEIEDLQQDVGRLQQQLQMVEEQIRIYEPDPLKMTSIAELETGEKNVVETLARVMERKETLLNNQISSYDPSAIQGMPTSFENVGWLPDGSQTQNHPHIFDASAPMDPLRDLSSTVYGSFSQGTSSNVVDPRSIGDCHVANPNDGNIQAWPQGYTLYPPPPHQHIQHDMVGTDHHHHHHIQDMMPHGQMNMPITASQVEPPKIELTEYDQCKQPNNHQHHGQ* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3296 345 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal7g3296 345 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mal7g3296 345 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal7g3296 345 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal7g3296 345 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal7g3296 345 Coils Coil 126 146 - -
Mal7g3296 345 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Mal7g3296 345 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Mal7g3296 345 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 278 - -
Mal7g3296 345 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 278 - -
Mal7g3296 345 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal7g3296 345 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal7g3296 345 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3296 Mal-Chr7 97320930 97325713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g3296 1 318 Type I MADS-box Gene Family AT1G22130 53.870 1.35e-109 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal7g3296 SRF-TF 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3296 - - pvu:PHAVU_008G170400g 514.998