Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3161 ATGACCGTTACAATTAGGAAGCTTTTCAAATCTAAATCCACACTTCAAAAGTGTTACAACATTACTAACTCAAAACACACAAAACTAGAAATAGAAATGGCAACAACAGAAGAAGAAGAGTACATGCAAAATCTCAGATCCAAAGCAACAGAACTTTTCATCAGAGAAGAATGGAACGAATCCATCAAAGCCTATTCCCATTTCATCACTCTCTGCACCCACCATCTCTCTCTTCCTCACTCCGACCCACTTCACCATCAAAAGCTTCACAAATCACTCTGCATTTCCCTCTGCAACCGCGCCGAAGCAAAATCCAAACTACGCGAATTCAACTCGGCGTTACAAGACTGTGATCATGCTCTACAAATTGATGCCACACATTTTAAGAGTCTTGTTTGTAAAGGTAAGATTTTGCTTTGTCTTAATAGATACTCTATGGCTTTGAATTGTTTCAAAACAGCTATGCTTGATTCTCAAGCAAGTGGGAGTTTTGAAATGCTTGTTGGGTTTGTTGAGAAATGTAAAAAGTTTGAATTTTTATCGAGGACTGGGTCGATGGATCTTTCTGATTGGGTTTTGAATGGGTTTCCTGGTAAGGCTCCTGAGCTTGCTGAGTTTATTGGTGCTGTTGAGATTAGAAAATCGGAGATTAGTGGGCGGGGGATTTTCGCTACTAAGAATATTGATGCTGGGTCTTTGATTATGGTTACTAAGGCGATTGCGATGGAGAGGAGTATTTTGGGAGGTAAAGATTTGAGTGAGGATACTCAATTGGTTATGTGGAAGAATTTTATTGATAAAGTTGTTGATTTTGTTAGGAAATGTTATAAGACTAGGGATTTGATTGGTAAATTGTCAATTGGAGAAAATGAGGATGAACTTGATGTGCCTGATGTGGATTTGTTTAGGCCTGAGAGTGTTGTTGAAGTGAATTCAAGTGAGGATGTTGAGATTGATATGGTTAAATTATTGGCTATATTGGATGTTAATTCTCTTACTGAGGATGCAGTTTCAGCCAATGTGTTGAGGAAGAACAATGATTGTTATGGTGTTGGGCTATGGTTGCTTCCTTCATTCATTAATCATTCATGTTGTCCTAATGCGAGGCGGTTGCATGTTGGGGATTATTTGATAGTTCATGCTTCAAGAGATTTGAAAGCTGGTGAAGAGATAACTTTTGCATATCTTGATCCACTTTCTCCCTTGAATAAGAGAAAAGAGATGTCTGTGACATGGGGGATTCATTGTAAGTGTAAGAGGTGTAAGTTTGAGGGGGAATTCTTGTTCTCCAAGCAAGAGGTGAAGGAGATTGAGATTGGTATTGAAAGAGGGATGGATGTAGGTGGTTTGGTGTATAAATTTGAGGAACAAATGAAGAGATGGAAGGTGAGAGGGAAAGAGAAGGGATACTTGAGGGCTTCATTTTGGTCTTTGTACTCGGAGGCTTATGGTTCGGAGAGGTGTATGAAAAGATGGGGAAGGAGAATTCCAGCACTGGATGCAGTGGTTGATAGCATCACAGATGTAGTGGGAGGTGATCACAGGGTGCTTAAGATCATGATGGAGGAATTGAAGAGAAAAGGTGGTGGTAGTGGTGGTGGAAATTTGGAGATGGAGAAACTTTTCAAGTTAGGAAGAGAAGTGTATGGGAAGGTAGTGAAAAAGCAAGCAATGAGGACACTGCTTGACCTTTGCATTGCTGATTGA 1707 0.3995 MTVTIRKLFKSKSTLQKCYNITNSKHTKLEIEMATTEEEEYMQNLRSKATELFIREEWNESIKAYSHFITLCTHHLSLPHSDPLHHQKLHKSLCISLCNRAEAKSKLREFNSALQDCDHALQIDATHFKSLVCKGKILLCLNRYSMALNCFKTAMLDSQASGSFEMLVGFVEKCKKFEFLSRTGSMDLSDWVLNGFPGKAPELAEFIGAVEIRKSEISGRGIFATKNIDAGSLIMVTKAIAMERSILGGKDLSEDTQLVMWKNFIDKVVDFVRKCYKTRDLIGKLSIGENEDELDVPDVDLFRPESVVEVNSSEDVEIDMVKLLAILDVNSLTEDAVSANVLRKNNDCYGVGLWLLPSFINHSCCPNARRLHVGDYLIVHASRDLKAGEEITFAYLDPLSPLNKRKEMSVTWGIHCKCKRCKFEGEFLFSKQEVKEIEIGIERGMDVGGLVYKFEEQMKRWKVRGKEKGYLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHRVLKIMMEELKRKGGGSGGGNLEMEKLFKLGREVYGKVVKKQAMRTLLDLCIAD* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3161 568 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 37 557 - -
Mal7g3161 568 SMART tpr_5 128 161 IPR019734 GO:0005515
Mal7g3161 568 SMART tpr_5 94 127 IPR019734 GO:0005515
Mal7g3161 568 Pfam SET domain 219 395 IPR001214 GO:0005515
Mal7g3161 568 SUPERFAMILY TPR-like 32 155 IPR011990 GO:0005515
Mal7g3161 568 Gene3D Tetratricopeptide repeat domain 30 165 IPR011990 GO:0005515
Mal7g3161 568 Gene3D SET domain 309 426 IPR046341 -
Mal7g3161 568 SMART set_7 208 402 IPR001214 GO:0005515
Mal7g3161 568 ProSiteProfiles SET domain profile. 208 396 IPR001214 GO:0005515
Mal7g3161 568 SUPERFAMILY SET domain 210 422 IPR046341 -
Mal7g3161 568 CDD SET_SMYD 324 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3161 Mal-Chr7 95532296 95534002 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mal7g3161 SET 9.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3161 - - mtr:MTR_4g082140 993.416