Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3109 ATGTTTGGTTCTGCTGGAATTGTTTCCAACATTGCTGCCTGCCTTCGACAAAACTTATCATTTCGCGGTTTGCAAGTACGGAATATAAACATTGGAGGTGGTCTTGGAGGTGAGATTCCAGATAACAAGCGCCTTGAGTATGCTCTTCAGCGTATCCATGGGATTGGCCGTGGAAAAGCTCATCACATTGTATCTGAGCTTGGAGTTGAGAACAAATATGTGAAGGACCTAAGCAAAAGAGAACTGTTTTCCCTTCGCGAATTGCTTTCCAAGTACTTGATTGGAAATGACTTGAAAAAGATAGTTGAGAGAGATGTGGGGAGGTTGGTGGGTATTCAATGCTACAGAGGGATCAGGCACGCCGATGGTTTACCTTGTCGGGGACAGCGAACTCATACAAATGCCCGAACTAGGAGGACTATGCGTACTTACAGGGGTTCAAGATAA 447 0.4497 MFGSAGIVSNIAACLRQNLSFRGLQVRNINIGGGLGGEIPDNKRLEYALQRIHGIGRGKAHHIVSELGVENKYVKDLSKRELFSLRELLSKYLIGNDLKKIVERDVGRLVGIQCYRGIRHADGLPCRGQRTHTNARTRRTMRTYRGSR* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3109 148 PANTHER SMALL RIBOSOMAL SUBUNIT PROTEIN S13, MITOCHONDRIAL 4 142 - -
Mal7g3109 148 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 4 142 - -
Mal7g3109 148 ProSitePatterns Ribosomal protein S13 signature. 116 129 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mal7g3109 148 Pfam Ribosomal protein S13/S18 36 137 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mal7g3109 148 Hamap 30S ribosomal protein S13 [rpsM]. 25 147 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mal7g3109 148 Gene3D - 35 99 - -
Mal7g3109 148 ProSiteProfiles Ribosomal protein S13 family profile. 35 140 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mal7g3109 148 Gene3D 30s ribosomal protein s13, domain 2 100 139 IPR027437 -
Mal7g3109 148 SUPERFAMILY S13-like H2TH domain 36 142 IPR010979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3109 Mal-Chr7 94831098 94831855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g3109 24 141 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 28.873 4.89e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3109 K02952 - gmx:100527465 233.802