Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2988 ATGTCGCTGCAAACTCTGAAGGAAACCACACTGAGACACTGCACAACCCAACAATCACAACCACCATCTTCATCACAATCCCTTCTCCGCAACTTCGATTCCAATTTCCCAATCAATAGAAAACCCCCCAAATCCTCTCTTGCCGCCCAGCTTCGCCTCCTTGAAGACCCCGACGACCCACCGTTTCAGCCCCACAATTTCCTTTCCCAACAAAACGACTCCAAAACCCAACAACCACAAGTAAAACTAGATGAAGAAGAAGAAGAAGATGATGAAGAGCCAGAGATAAAGAGGGTGAAATTTAGTTCAGTTAAATCTTCTCAGTTTCAATTTGATCATACTGGTCCCTTTGAGCCTTTGGTTTTGTCTTCGGATCAAGAATTCCCTTTAGTTCAGGTTCCTGCGTCTATAAACTGTAGACTGCTTGAGCATCAGAGAGTGGGAGTGAAGTTTCTGTATGATTTGTACAAGAAGAATCATGGAGGCATCCTTGGAGATGACATGGGTCTTGGGAAGACCATTCAGACAATAGCATTTCTTGCTGCCGTATTTGGTAAAGGTGACTCCATTCTTAGTGAGAAGCCGGTGGAGAAAAGAGACCCTGTATTAATAATTTGCCCATCATCCATTATTCAAAACTGGGAGAGTGAATTCTCTAAGTGGTCCAACTTCAGCGTTGCCATTTATCACGGCGCAAACCGGGATTTGATATATGATAAATTGGAAGCAAATGGAGTGGAGGTACTTATTACCAGTTTTGACACTTACAGGATTCATGGCAGCAGTTCCTTATCAGATATACACTGGAATGTTTTGATTATTGATGAGGCTCATCGACTTAAGAATGATAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCGGCGACGATATGGTCTTACTGGGACCGTGATGCAAAATAAGATCTTAGAATTGTTCAATATCTTTGATTTAGTTGCACCTGGATCCCTTGGAACGCGGGAACACTTCCGTGAGTTTTATGATGAACCCCTTAAACATGGTCAGAGGTCAACTGCTCCTGATAGATTTGTCCAAATTGCTAATAAGAGAAAAAAACACCTTGTAGCGGTTCTTAATAAATATATGTTGAGAAGGACAAAAGAAGAGACCATAGGGCATCTTATGATGGGGAAGGAAGATAACATTGTTTTTTGTGCAATGAGTGATTTGCAAAAACGCATTTACAGGAGAATGATCCAGCTTCCTGACATTCAGTGCCTGATAAACAAGGACCTACCTTGTAGTTGTGGTAGCCCTCTCACTCAAGTTGAATGTTGCAAAAGGACGGTACCAGATGGAGCTATTTGGCCTTACCTTCACAAAGATAACCTCGATGATGGATGTGATTCATGCCCCTTTTGCATTGTCCTTCCATGCCTTGTCAAGCTACAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAACAAGTTAAAGATGCAAAGTTTGCTGCTGCTGTCTATGGCCCAGACATTGACTTAGTTGGTGGGAGCATGCAGAATGAGAGTTTCCTGGGTCTAAGTGATGCAGAACATTGTGGCAAAATGCGAGCACTTGAAAAGCTATTGTTGTCATGGTTTTCACATGGCGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTATCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAATTTACGTCAGTCTCTGGTTGATGATTTCAACTCTAGTCCAAGCAAACAAGTGTTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCGAACCGTGTCGTAATATTTGATCCCAACTGGAATCCTTCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGATATGGACAGAAACGGCATGTTGAGGTATTCCGTCTTCTCTCAGCTGGTTCACTTGAAGAACTAGTTTATTCTCGTCAGGTGTACAAGCAACAGCTCTCAAATATTGCTGTCTCTGGGAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGATTGCAAAGAATTTCAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAACTATTTACCAGCGAGATCGTTGAATCGCATGAGACGGGTAAAAAAGACGGGCTTAAAGCAGAAAAACAGAAAAAAATAAATATTTCAGAAGAAACAAGTTTATTAGCATCAGAGTCTGAAACCAGGTTATGTTCTGAATCTGCGAGGGCTACAAGTAAACCAGATATTGAATTTGAAGACCTCGGCATTGTTTACACTCATCGCAATGAAGACATTGTCAACTCCCGACCAGTGATTCAAGGGCAGTTATCTACCAGCAGCACCCCTACAAGCGATAGCCTAAGCAAGCCAAGCATCTCTTTAGTCAATCAAAGGAAAAAATCAGATTGTGTATCTAAAAAACAGAAAGTTCCTTTGATTGATGAAAGGAAGAGAGCCCAATTTAGCCTCCTTGCAGAGTCTATGGGCATGGGAGAGCTTGAATTTAGCAAATGGTTACTATCAGCCACTCCAATAGAGAGAGAAAAAGTGCTTATAGACTATGAGAAGAAGAAGACTAAGGATTGGGCGGAATTTAGGGTGGGAACGGGAAAGATTTTCCCACCATGGGTCAATTGA 2697 0.4171 MSLQTLKETTLRHCTTQQSQPPSSSQSLLRNFDSNFPINRKPPKSSLAAQLRLLEDPDDPPFQPHNFLSQQNDSKTQQPQVKLDEEEEEDDEEPEIKRVKFSSVKSSQFQFDHTGPFEPLVLSSDQEFPLVQVPASINCRLLEHQRVGVKFLYDLYKKNHGGILGDDMGLGKTIQTIAFLAAVFGKGDSILSEKPVEKRDPVLIICPSSIIQNWESEFSKWSNFSVAIYHGANRDLIYDKLEANGVEVLITSFDTYRIHGSSSLSDIHWNVLIIDEAHRLKNDKSKLYKACLEIKTRRRYGLTGTVMQNKILELFNIFDLVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKKHLVAVLNKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRIYRRMIQLPDIQCLINKDLPCSCGSPLTQVECCKRTVPDGAIWPYLHKDNLDDGCDSCPFCIVLPCLVKLQQISNHLELIKPNPKDDPDKQVKDAKFAAAVYGPDIDLVGGSMQNESFLGLSDAEHCGKMRALEKLLLSWFSHGDKVLLFSYSVRMLDILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPSQDLQAQDRSFRYGQKRHVEVFRLLSAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIVESHETGKKDGLKAEKQKKINISEETSLLASESETRLCSESARATSKPDIEFEDLGIVYTHRNEDIVNSRPVIQGQLSTSSTPTSDSLSKPSISLVNQRKKSDCVSKKQKVPLIDERKRAQFSLLAESMGMGELEFSKWLLSATPIEREKVLIDYEKKKTKDWAEFRVGTGKIFPPWVN* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2988 898 CDD SF2_C_SNF 528 654 - -
Mal7g2988 898 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 324 IPR014001 -
Mal7g2988 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 696 IPR027417 -
Mal7g2988 898 PANTHER SNF2/RAD54 FAMILY MEMBER 62 870 - -
Mal7g2988 898 SMART helicmild6 560 643 IPR001650 -
Mal7g2988 898 Pfam SNF2-related domain 157 413 IPR000330 GO:0005524|GO:0140658
Mal7g2988 898 Gene3D - 386 754 IPR027417 -
Mal7g2988 898 SMART ultradead3 137 332 IPR014001 -
Mal7g2988 898 MobiDBLite consensus disorder prediction 64 78 - -
Mal7g2988 898 MobiDBLite consensus disorder prediction 789 811 - -
Mal7g2988 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 374 IPR027417 -
Mal7g2988 898 Gene3D - 118 373 IPR038718 -
Mal7g2988 898 MobiDBLite consensus disorder prediction 1 41 - -
Mal7g2988 898 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 62 870 - -
Mal7g2988 898 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 534 687 IPR001650 -
Mal7g2988 898 MobiDBLite consensus disorder prediction 1 96 - -
Mal7g2988 898 Pfam Helicase conserved C-terminal domain 531 643 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2988 Mal-Chr7 93201803 93207603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2988 161 673 RAD5 or RAD16-like Gene Family AT1G02670 26.750 5.83e-33 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal7g2988 SNF2_N 4e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2988 K20098 - gmx:100781003 1345.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g2988 7 93201803 93207603 Mal7g2988 7 93201803 93207603 ECH