Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2810 ATGATTACGCCTCCATTACGCATGAAAAACGATGATGATTACTCCTCCATTGCAGAAGATGAAAATCACTTCTCAGTCTTGAGTGAATCCGACATAAAGTATCATCAAAACAATGACATCAACCACATTTTATCAATTCTTTCCATATCAAAACCACTTGCATGCCTTTTACTCACCCACTACAATTGGAACACCACTCATGTTTTGGAATCATGGTTTGATAACCCACAAAAAGTTCAAAAAACCATAGGCTTATCAAACAAACCCCACGTAGAAGGATTAGGGTTTCCAAACTCATCACAAACTCCCACCATGTGTGATATCTGTTTTGAAACCTTCTCTAAAGATGAAATTAGGTCATCATGGTGTGGTCATCCGTTTTGCGTCAATTGCTGGAATCAATACGTCGATGTAAACATCGATGATCTTAACTGTTTCAAACTTAGATGCCCTCAACCTTCTTGTAATGCAGCTGTTGATCAAGACATGATTCATCAACTTGCAAGTAAGTCAAGAAAGATTAAGTATGATCAATTTTTCTTTCGGTCTTACGTGGAAAACAACACTAATACGAAATTGAAGTGGTGTCCTGCTCGGAATTGTTGTTATGCTATAAGTTATGATCAATTATTATCAGATTCTAGTTCTAGAATAAATTATGATGTTACATGTCATTGTTATCATAGCTTTTGTTGGAAATGTGGTGAAGAAGCTCATACACCTGTGGATTGTGAAACTTTTGGTAAATGGATGAGAAAGATTAGTTCTGATTTTGAGGCTTCAACTAATACTTGGATTGTTGCTAACACAAAACCATGTCCTAATTGCAAGATAGCTATTGAGAAAAACCAAGGGTGCAGGCACATGGTGTGCAGATTATGTAAGTGTCACTTTTGCAGGGAGTGTCTCCGTGGTATGTCTATATGTCGGAAAGAAGGTTGCAGCGGCACTTTAAATAATGTACAAGTTTGGCAATCTCATCAAGATATATATGCTGATGAAATGCAAAGAACTAATGCAAAAAATTGTTTGGATAGGTACACTTACTATGAAATTTCAAGAAAAGAGGCTCTTCAAAATTTGATTGAGATGAGGAGTACAATGCATACAAAGAGACTGAGTATATCATGGGTAAAGCCAGACACTTATTTTGATTTCATAAAGGATGCATTGAAACAGTTGGTTGAATGTAGAAGAGTTCTCAAATGGGTTTATGTATATGGATACTATCTTCCTGAAAATGAAAGTGCTAGGATTGAGTTTTTAAGCACATAG 1275 0.3608 MITPPLRMKNDDDYSSIAEDENHFSVLSESDIKYHQNNDINHILSILSISKPLACLLLTHYNWNTTHVLESWFDNPQKVQKTIGLSNKPHVEGLGFPNSSQTPTMCDICFETFSKDEIRSSWCGHPFCVNCWNQYVDVNIDDLNCFKLRCPQPSCNAAVDQDMIHQLASKSRKIKYDQFFFRSYVENNTNTKLKWCPARNCCYAISYDQLLSDSSSRINYDVTCHCYHSFCWKCGEEAHTPVDCETFGKWMRKISSDFEASTNTWIVANTKPCPNCKIAIEKNQGCRHMVCRLCKCHFCRECLRGMSICRKEGCSGTLNNVQVWQSHQDIYADEMQRTNAKNCLDRYTYYEISRKEALQNLIEMRSTMHTKRLSISWVKPDTYFDFIKDALKQLVECRRVLKWVYVYGYYLPENESARIEFLST* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2810 424 ProSiteProfiles Zinc finger CCHC-type profile. 231 244 IPR001878 GO:0003676|GO:0008270
Mal7g2810 424 SUPERFAMILY RING/U-box 177 251 - -
Mal7g2810 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 187 IPR013083 -
Mal7g2810 424 SUPERFAMILY RING/U-box 265 307 - -
Mal7g2810 424 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 21 421 - -
Mal7g2810 424 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 21 421 IPR031127 GO:0004842|GO:0016567
Mal7g2810 424 Gene3D - 240 423 - -
Mal7g2810 424 SUPERFAMILY RING/U-box 102 186 - -
Mal7g2810 424 ProSiteProfiles Zinc finger RING-type profile. 106 151 IPR001841 -
Mal7g2810 424 CDD RING-HC_RBR_TRIAD1_like 106 155 - -
Mal7g2810 424 SMART ibrneu5 174 244 IPR002867 -
Mal7g2810 424 SMART ibrneu5 259 309 IPR002867 -
Mal7g2810 424 Pfam IBR domain, a half RING-finger domain 175 244 IPR002867 -
Mal7g2810 424 ProSiteProfiles TRIAD supradomain profile. 102 318 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2810 Mal-Chr7 90496209 90497483 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2810 21 422 ARIADNE family AT1G65430 44.552 3.50e-106 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2810 K11968 - gmx:100801350 384.415