Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2808 ATGGAACAACATTTCTCAGTTTTGAGTGAATCTGACATAAAGCACCTTCAAGATGCTGACATCAATCATCTTTCATCAATTCTCTCCGTATCAAGACCAGTTGCATGTCTTTTGCTCACCCACTACAATTGGAATGTCACTCAAGTTTCGGAATCATGGTTTGATAACCAACAAAAAGTTCGAAAGGCCATAGGCTTATCGAACCAACCCGGTGTAGAATTATGGTTTGCAATCTCATCACAAACTCTCATTTGTGGTATTTGCTTAGAAATCTTTTCTAGCGATGAGATTAGATCATCATGGTGTGGTCATTCATTTTGCATCAATTGCTGGAATCAATATGTTGACACACATATCGATGATCATAACTGCTTCAAACTCAAATGCCCCGAGCCTTCTTGCAATGCAGCTGTAGACGAAGACATGATTCGACAATTGGCAAGTGAGTCTAGAAAGATTAAATATGATCAATTTTTCTTTCGTTCTTATGTTGAAAACAATGATAACATGAAATTGAAGTGGTGTCCTGCTCCAGATTGTTGTAATGCTATAAGTTATGAATTACCATATCATCATGGTTCTAGGAGTTCTAGAATAAATTATGATGTTACATGTCTTTGTTATCATAGTTTTTGTTGGAATTGTGGTGAAGAAGCTCATACACCTGCTGATTGTGAAACTGTTGTTAAATGGATGAAAAAGATTAGTTCTGAATTTAAGATCACTACTACTGGTTGGATTATTGCTAACACAAAAAGATGTCCTAAATGTAAGATACCCATTGAGAAAAATAATGGGTGTAATCACATGGCATGCAAATGTGGGTTCCAATTTTGTTGGTTATGTCTCCGTGATTTGTCTAATTGTCGCGACAGTGTCAATTGCGCGCAAGTTCAGGAATTTCAAGAGATATTTGGAGATGAGATGAAAAGAAACCATGCAAAAAATCATTTGGATAGGTACACTTACTACCATCAAGGTTGGGCTAAGAATGAAATTTCAAGAAAAAAGTTTGGAACTTATTTTGGTTTCATGATAAAGGATGCATTGAAACAAATAGTTGAATGTAGAAGAATTCTCAAATGGAGTTATGTATATGGATACTATCTTCCTGAGGATGAAAATGCTAAGATTGAGTTTTTTGAACACATCCTAGGCATAGCTCAAGTTGTTTTGGATAGGCTTCATCATTGTGCAGAAAATGGATTAAGAAAACAGCTTCTAAATAATGGGTCAGAAGAAGAATTTCGTGATTTTCGCATGAAGCTAACCACTAAGGCTGGGGTGGCTAAAAATTATTTCATGAATTTGGTAAAAGAATTTGATAATGGTTTAGATGTTGTGCGTGTGAAAAACTATACTGAAATTGATACTTGA 1377 0.3537 MEQHFSVLSESDIKHLQDADINHLSSILSVSRPVACLLLTHYNWNVTQVSESWFDNQQKVRKAIGLSNQPGVELWFAISSQTLICGICLEIFSSDEIRSSWCGHSFCINCWNQYVDTHIDDHNCFKLKCPEPSCNAAVDEDMIRQLASESRKIKYDQFFFRSYVENNDNMKLKWCPAPDCCNAISYELPYHHGSRSSRINYDVTCLCYHSFCWNCGEEAHTPADCETVVKWMKKISSEFKITTTGWIIANTKRCPKCKIPIEKNNGCNHMACKCGFQFCWLCLRDLSNCRDSVNCAQVQEFQEIFGDEMKRNHAKNHLDRYTYYHQGWAKNEISRKKFGTYFGFMIKDALKQIVECRRILKWSYVYGYYLPEDENAKIEFFEHILGIAQVVLDRLHHCAENGLRKQLLNNGSEEEFRDFRMKLTTKAGVAKNYFMNLVKEFDNGLDVVRVKNYTEIDT* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2808 458 ProSiteProfiles TRIAD supradomain profile. 81 299 IPR044066 -
Mal7g2808 458 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 454 IPR031127 GO:0004842|GO:0016567
Mal7g2808 458 Pfam IBR domain, a half RING-finger domain 249 285 IPR002867 -
Mal7g2808 458 Pfam IBR domain, a half RING-finger domain 154 225 IPR002867 -
Mal7g2808 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 166 IPR013083 -
Mal7g2808 458 SMART ibrneu5 240 295 IPR002867 -
Mal7g2808 458 SMART ibrneu5 153 225 IPR002867 -
Mal7g2808 458 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 454 - -
Mal7g2808 458 SUPERFAMILY RING/U-box 240 300 - -
Mal7g2808 458 ProSiteProfiles Zinc finger RING-type profile. 85 130 IPR001841 -
Mal7g2808 458 Gene3D - 221 447 - -
Mal7g2808 458 ProSiteProfiles Zinc finger CCHC-type profile. 212 225 IPR001878 GO:0003676|GO:0008270
Mal7g2808 458 SUPERFAMILY RING/U-box 80 166 - -
Mal7g2808 458 SUPERFAMILY RING/U-box 155 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2808 Mal-Chr7 90486419 90487795 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2808 2 448 ARIADNE family AT1G65430 44.979 6.19e-134 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2808 K11968 - gmx:100801350 446.817