Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2806 ATGGAAGACGGTGAAATTGATATCCGCCACTTCTTTGAAGAAGATAATGACATATATTCTACTAAGTTCTCTATTTTAAGCGAATCTGACATAAAGCATCTTCAAAACATTGACATCAATCGTCTTTTATCAGTTCTTTCCATAACAAGACCTATTGCATGCCTTTTACTCACCCACTATAATTGGAACATCTTGCAAGTATTCGATTCTTGGTTCGATAACCAACAAAAAGTTCGAAAAACCCTAGGCTTATCGAACAAACCACACCACCAAATAGTAGAATTAGGGTTTCCAAACTCAGAAGAAAATCACACATGTGGTATTTGTTTTGATACTTTTTCGACCGATGAGATCAAGTCATCATGGTGTGGTCATCCATTTTGCATTAGTTGCTGGAATCAATACATCGATATAAACATCGATGATCTTAACTGTTTCAAACTTAAATGCCCTCAACCTTCATGTAATGCAGCTGTAGATGAAGACATGATTCAACAATTAGCAAGTAAGTCAAGAAAGATAAAATATGATCAATTTTTGTTTCGTTCTTATGTTGAAAACAACAATAACATGAAATTGAAGTGGTGTCCTGCTCCAAATTGTTGTTATGCTATTCGTTACGAATTAGCATATGATGATTCTAGTAGCTCTAGAATAAATTATGATGTTACATGTCATTGCTATCATAGCTTTTGTTGGAATTGTGGTGAAGATGCTCATGCACCTTTGGATTGTGAAACTGTTGCTGAATGGATGAAAAAGATTAATTCTGAATTTAAGATCACCACTACAGGTTGGATTATTGCCAACACTAAACCATGTCCTAATTGTAAGATACCTATTCAAAAAAACAAAGGGTGTAATCATATGACATGCAAATGTAGGTTCGAATTTTGCTGGTTATGTCTCTGCGATCAGTGTAATTGTAAGGGTTCGAATCGCTTACAAGTTCAGGAATTTCAAGAGATATTTGAAGATCAAATACAAAGAAACCATGAAAAAAGGCATTTGGATAGGTACACTTACTACCATCAAGGTTGGTCTAACAATGAATTTGCAAGGAAAAAGGCTCTTCAAAATTTGATTCAATTGAGAAGTATATCATGGAAAAAGTCTGGAACTTATTTTAAGTTTAAGGATGCATGGAAACAGGTAATTGAATGTAGAAGAATTCTTAAATGGAGTTATGTATATGGATATTATCTTCCTAAGGATGAAAATGCTAAGATTGAGTTTTTTGATCACATCCAAAGCATAGCTCAAGTTGTTTTGGATAGGCTTCATCATTGTGCTGAAGATGGATTAAGAAAGCAGCTTCTAAATGATTGGTTAGAAGAAGAGTTTCATGATTTTCAGGTGAAGTTGATCGATCTGACTAGGGCGAGTAAAAGTCATTTTATGAATTTAGTTAAAGAATTAGATAATGGTTTAGATGTTGTGCGTGTGAAAAACTATACTGAAATTGAGGTACGCTCAAGAACATTTGAATGA 1491 0.3394 MEDGEIDIRHFFEEDNDIYSTKFSILSESDIKHLQNIDINRLLSVLSITRPIACLLLTHYNWNILQVFDSWFDNQQKVRKTLGLSNKPHHQIVELGFPNSEENHTCGICFDTFSTDEIKSSWCGHPFCISCWNQYIDINIDDLNCFKLKCPQPSCNAAVDEDMIQQLASKSRKIKYDQFLFRSYVENNNNMKLKWCPAPNCCYAIRYELAYDDSSSSRINYDVTCHCYHSFCWNCGEDAHAPLDCETVAEWMKKINSEFKITTTGWIIANTKPCPNCKIPIQKNKGCNHMTCKCRFEFCWLCLCDQCNCKGSNRLQVQEFQEIFEDQIQRNHEKRHLDRYTYYHQGWSNNEFARKKALQNLIQLRSISWKKSGTYFKFKDAWKQVIECRRILKWSYVYGYYLPKDENAKIEFFDHIQSIAQVVLDRLHHCAEDGLRKQLLNDWLEEEFHDFQVKLIDLTRASKSHFMNLVKELDNGLDVVRVKNYTEIEVRSRTFE* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2806 496 ProSiteProfiles Zinc finger RING-type profile. 106 151 IPR001841 -
Mal7g2806 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 188 IPR013083 -
Mal7g2806 496 SUPERFAMILY RING/U-box 266 310 - -
Mal7g2806 496 Gene3D - 241 479 - -
Mal7g2806 496 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 22 488 IPR031127 GO:0004842|GO:0016567
Mal7g2806 496 Pfam IBR domain, a half RING-finger domain 269 305 IPR002867 -
Mal7g2806 496 Pfam IBR domain, a half RING-finger domain 175 245 IPR002867 -
Mal7g2806 496 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 22 488 - -
Mal7g2806 496 CDD RING-HC_RBR_TRIAD1_like 106 155 - -
Mal7g2806 496 SUPERFAMILY RING/U-box 100 187 - -
Mal7g2806 496 SUPERFAMILY RING/U-box 175 252 - -
Mal7g2806 496 SMART ibrneu5 174 245 IPR002867 -
Mal7g2806 496 SMART ibrneu5 260 309 IPR002867 -
Mal7g2806 496 ProSiteProfiles TRIAD supradomain profile. 102 327 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2806 Mal-Chr7 90476448 90477938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2806 23 480 ARIADNE family AT1G65430 44.444 3.83e-134 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2806 K11968 - han:110942133 437.573