Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2738 ATGAGTGGGAAATTAACTGGGAAAGTGAAATGGTTCAATGATCAGAAGGGGTTTGGATTCATTACCCCTGATGATGGAAGCGAAGAGTTGTTTGTTCACCAATCTCAGATCCAGACTGAAGGATTCCGATCTCTCGCTGAAGGTGAATCTGTTGAGTATCATGTTGAGTCTGATTCCGATGGAAGATCCAAGGCTGTTAGTGTGACTGGTCCTGATGGTGCTTCTGTTCAAGGAAGCCGTCGCGGTGGTGGCGGCGGCGGTGGTGGTTACGAACGTGGTGGAGGTGGTTACGGTGGTGGTGGAGGTGGTTACGGTGGTGGAGGTGGTTATGGTGGAAGAGGTGGAGGAGGCTATGGTGGTGGAGGTGGTGGATATGGTGGCGGCGGTGGATATGGTGGTGGTGGACGTGGAGGAGGCCGTGGAGGTGGTGGTGGTGGTGGATGCTATAACTGTGGTGAATCTGGACACATGGCGAGGGATTGCAGCAGCGGTGGAGGAGGTGGTGGTGGAAGATATGGAGGTGGTGGCGGTGGCGGTGGCGGTGGAAGCTGCTACAGCTGTGGTGAATCTGGTCATTTCGCCAGAGATTGTCCAACCGGCAGTGCTCGTTGA 612 0.5474 MSGKLTGKVKWFNDQKGFGFITPDDGSEELFVHQSQIQTEGFRSLAEGESVEYHVESDSDGRSKAVSVTGPDGASVQGSRRGGGGGGGGYERGGGGYGGGGGGYGGGGGYGGRGGGGYGGGGGGYGGGGGYGGGGRGGGRGGGGGGGCYNCGESGHMARDCSSGGGGGGGRYGGGGGGGGGGSCYSCGESGHFARDCPTGSAR* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2738 203 SMART csp_8 6 71 IPR011129 GO:0003676
Mal7g2738 203 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Mal7g2738 203 MobiDBLite consensus disorder prediction 56 87 - -
Mal7g2738 203 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Mal7g2738 203 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Mal7g2738 203 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Mal7g2738 203 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
Mal7g2738 203 SUPERFAMILY Retrovirus zinc finger-like domains 138 200 IPR036875 GO:0003676|GO:0008270
Mal7g2738 203 Gene3D - 140 170 - -
Mal7g2738 203 Gene3D - 179 203 - -
Mal7g2738 203 ProSiteProfiles Zinc finger CCHC-type profile. 184 198 IPR001878 GO:0003676|GO:0008270
Mal7g2738 203 Gene3D - 2 82 IPR012340 -
Mal7g2738 203 ProSiteProfiles Zinc finger CCHC-type profile. 148 161 IPR001878 GO:0003676|GO:0008270
Mal7g2738 203 CDD CSP_CDS 6 70 IPR002059 GO:0003676
Mal7g2738 203 SMART c2hcfinal6 183 199 IPR001878 GO:0003676|GO:0008270
Mal7g2738 203 SMART c2hcfinal6 147 163 IPR001878 GO:0003676|GO:0008270
Mal7g2738 203 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Mal7g2738 203 PANTHER COLD SHOCK PROTEIN 2 1 200 - -
Mal7g2738 203 Pfam Zinc knuckle 147 162 IPR001878 GO:0003676|GO:0008270
Mal7g2738 203 Pfam Zinc knuckle 183 198 IPR001878 GO:0003676|GO:0008270
Mal7g2738 203 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 200 - -
Mal7g2738 203 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2738 Mal-Chr7 89608676 89609287 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Mal7g2738 CSD 7.1e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2738 - - zju:107427522 155.606