Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2433 ATGCCGCCTCCGTCGAAGCCAACGAGACAACCACAGGAAATCAGCGGCAGAGACTCGGAGGAATCGTTGACTCCTTCCAACAACCTATGGGTTGGGAATCTATCGCCGGACGTAACAGATTCCGATCTGATGGATCTGTTCGTTCAATACGGTGCTCTCGATAGCGTCACATCTTATTCCGCTCGCAGTTACGCTTTCGTGTTCTTCAAACGCGTTGATGATGCAAAAGCCGCTAAAAACGCTCTTCAGGGATTCAATTTTCGCGGCAATTCCTTGAAAATTGAGTTTGCTAGACCGGCAAAGACATGTAAACAGCTTTGGATAGGTGGCATTAGCCCAGCTGTTACAAAGGAAGACCTGGAAGCTGACTTCCGTAAATTTGGTAAAATTGAGGATTTCAAGTTCTTCAGAGACAGAAATACTGCATGTGTTGAATTTTTCAATTTAGACGATGCTATTCAGGCAATGAAAATTATGAATGGAAAACGTATTGGTGGGGAAAACATTCGTGTTGACTTCCTCCGATCAAATTATGCAAAAAAAGATCAATTGCTTGATTATGGGCAGTTTCATGGCAAAAGCTTTGGGCCTTCTGATTCCTATTCTGGACAGAAAAGGCCACTGAATTCGCAACCACTAATGGGGAGGAAGGGTGACAGTCAACCCAATAATATATTGTGGATCGGTTATCCTTCCAATGTTAAGATTGATGAGCAAATGCTCCACAATGCCATGATCCTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGAAATTATTCATTTGTTGAATTTAGAAGTGTTGATGAAGCCCGGCGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTCAATGATTCTCGCATAACAATTAATTATTCTAACGGTGACCAAGTACATGGCAAAGACTACCCTGGCTTTTATCCTGGAAGTAATGGGCCAAGACCTGATTTATTCCTAAACGAGCATCCATACCGACCTTCACAAATGGATTTATTTGGTCATAATCGTCCTATAATTCCGAATAATTTTCCTGGACAGTTGCCAACTGGTGGTATTGTTGGTCCAAACATACCAATCCGGCCCTTTGGTCCTAACGGTGGTCCTGAATCTGTTGTTTCTGGCCCTGAGTTTAACGAGAATAGTACACTACACAAATTTCAGGATGGTAGCTCCACAAATAAGATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGTTGCTTTCTTCTCCTGTACCGAGTGCTAGGCTTCCTGCAAGATCATCCTCTGGTGCATGGGATGTACTTGACATAAATCATATTCCAAGAGATTCTAAGCGGTCAAGGATAGATGGTGCATTACCTAATGATGATCCTTATGCAGGGAGGGGTATCCTTGGTTCAGCAAGCACGAGGGTTACAGGTGGAGTACATGCTTCTGTCCAACCTGATCATATATGGCGCGGACTTATTGCAAAAGGAGGAACTCCTGTTTGTCGTGCTAGATGTGTCCCTGTAGGGAAAGGGATCGGGACAGAGCTTCCTGAAGTTGTTGATTGCTCAGCTAGGACGGGATTGGATGTACTCGCAAGACACTATGCTGATGCAATTGACTTTGAGATTGTTTTCTTTCTGCCTGATAGCGAAGATGATTTTGCTTCATACACTGAATTCCTACGCTACCTTGGTGCAAAACATCGTGCTGGTGTTGCCAAATTTGACAATACAACTTTATTCTTGGTACCTCCTTCTGATTTCCTGACAGAAGTTATGAAAGTCACTGGACCTGAACGTTTATATGGTGTCGTTCTCAAGTTTGCACCAGTACCAAGTGGTGTGCCTGTGCACCAATCATCACATTTGCCTGTACCGTCAAATCAATATATGCAGCAGATGCCTCCTTCACAGGCTGAGTATGATATAAATCCTGCAAAGGAGGAACAAGTTTTGGCAATGGAATACAACCGGATGTTGCACGAGGATTCTAAGCTTCCTGCTAAACAAGTATACCCACCTACAGGTGGGCCTCCTTCAGTTCAGCCTGCAGCTCCAGACTATGCTCAAAATACTGCTGGTTCTGGGTCTCAAGCTGGAGCTGCATTAACGCCTGAGCTTATTGCAACTTTAGCTTCTTTTCTTCCCACAAATGCACAGTCGTCTGCTACTGATGGTGCCAAGTCAGGTGTAGGCTCCTCAACTGTGAAGCCTCCATATCCTCCTGTGGCACCTAGTGATGGAAACCAATCTCAATTATGGAAACAGGATCATCAAATTGCAGATCAATCCATTCATCCATCTCAGCAGTTTAGGAATATGTATAACAGTCACAATGCTCATTATCAGCCTTACCCGCCAGCATCAGTTCCTGGCCACACTGCTCAAGTGTTCTCTGGCAGTTCTTATATTCAAGACAATGCTGTTAGTCAGCAACAGCAAGGAGTTGTTTCATCTAGACTCATGTCTAATTTTGTGACACCTACTCAAAGTGGACAGGTAGCTGCATCCCCCCATTTCAGTCATCAGTATCAGGCTGAAGTTCCCCCCAATACTCAGAAAGGCTTTGGTGTGGTGCCGGGAAGTGATGCCTCTGTTTTATACAATTCTCAGGCTTTCCAGCAACCTAATAATAACCCCCAGCCTTTCCAACAACCTAATAATAACCCCCAGCCTTTCCAGCAACCCAATAATCCTCAGCATCAGCCTGTCATGCAATATACTGCAGAACAAATAAACTCAAACCTTCCCATTCAACAACATCCTGCCTTTGGAGTTGGTCAAGGCACCCCAGAATTGGAGGCTGATAAGAACCAGAGATACCAGTCAACATTGCAGTTTGCTGCCAATCTTCTACTCCAAATACAGCAGCAGCAAACACAAGGAGGACCCGGGCCAGGAGCTCAACAATAA 2898 0.4455 MPPPSKPTRQPQEISGRDSEESLTPSNNLWVGNLSPDVTDSDLMDLFVQYGALDSVTSYSARSYAFVFFKRVDDAKAAKNALQGFNFRGNSLKIEFARPAKTCKQLWIGGISPAVTKEDLEADFRKFGKIEDFKFFRDRNTACVEFFNLDDAIQAMKIMNGKRIGGENIRVDFLRSNYAKKDQLLDYGQFHGKSFGPSDSYSGQKRPLNSQPLMGRKGDSQPNNILWIGYPSNVKIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSVDEARRAKEGLQGRLFNDSRITINYSNGDQVHGKDYPGFYPGSNGPRPDLFLNEHPYRPSQMDLFGHNRPIIPNNFPGQLPTGGIVGPNIPIRPFGPNGGPESVVSGPEFNENSTLHKFQDGSSTNKMGPNWKRPSPPAPGLLSSPVPSARLPARSSSGAWDVLDINHIPRDSKRSRIDGALPNDDPYAGRGILGSASTRVTGGVHASVQPDHIWRGLIAKGGTPVCRARCVPVGKGIGTELPEVVDCSARTGLDVLARHYADAIDFEIVFFLPDSEDDFASYTEFLRYLGAKHRAGVAKFDNTTLFLVPPSDFLTEVMKVTGPERLYGVVLKFAPVPSGVPVHQSSHLPVPSNQYMQQMPPSQAEYDINPAKEEQVLAMEYNRMLHEDSKLPAKQVYPPTGGPPSVQPAAPDYAQNTAGSGSQAGAALTPELIATLASFLPTNAQSSATDGAKSGVGSSTVKPPYPPVAPSDGNQSQLWKQDHQIADQSIHPSQQFRNMYNSHNAHYQPYPPASVPGHTAQVFSGSSYIQDNAVSQQQQGVVSSRLMSNFVTPTQSGQVAASPHFSHQYQAEVPPNTQKGFGVVPGSDASVLYNSQAFQQPNNNPQPFQQPNNNPQPFQQPNNPQHQPVMQYTAEQINSNLPIQQHPAFGVGQGTPELEADKNQRYQSTLQFAANLLLQIQQQQTQGGPGPGAQQ* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2433 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 170 IPR000504 GO:0003723
Mal7g2433 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 93 IPR000504 GO:0003723
Mal7g2433 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 290 IPR000504 GO:0003723
Mal7g2433 965 MobiDBLite consensus disorder prediction 868 896 - -
Mal7g2433 965 Pfam SPOC domain 480 594 IPR012921 -
Mal7g2433 965 Gene3D - 6 101 IPR012677 -
Mal7g2433 965 Gene3D - 102 183 IPR012677 -
Mal7g2433 965 MobiDBLite consensus disorder prediction 716 754 - -
Mal7g2433 965 CDD RRM3_Spen 29 98 - -
Mal7g2433 965 MobiDBLite consensus disorder prediction 915 936 - -
Mal7g2433 965 MobiDBLite consensus disorder prediction 1 26 - -
Mal7g2433 965 MobiDBLite consensus disorder prediction 364 424 - -
Mal7g2433 965 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 1 965 - -
Mal7g2433 965 MobiDBLite consensus disorder prediction 196 217 - -
Mal7g2433 965 MobiDBLite consensus disorder prediction 878 892 - -
Mal7g2433 965 MobiDBLite consensus disorder prediction 376 400 - -
Mal7g2433 965 CDD RRM3_Spen 106 175 - -
Mal7g2433 965 SMART rrm1_1 28 95 IPR000504 GO:0003723
Mal7g2433 965 SMART rrm1_1 225 293 IPR000504 GO:0003723
Mal7g2433 965 SMART rrm1_1 105 172 IPR000504 GO:0003723
Mal7g2433 965 PANTHER RNA RECOGNITION MOTIF-CONTAINING 1 965 - -
Mal7g2433 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 297 IPR000504 GO:0003723
Mal7g2433 965 Gene3D - 214 306 IPR012677 -
Mal7g2433 965 MobiDBLite consensus disorder prediction 663 693 - -
Mal7g2433 965 SUPERFAMILY RNA-binding domain, RBD 103 199 IPR035979 GO:0003676
Mal7g2433 965 CDD RRM3_Spen 226 296 - -
Mal7g2433 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 99 IPR000504 GO:0003723
Mal7g2433 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 176 IPR000504 GO:0003723
Mal7g2433 965 SUPERFAMILY RNA-binding domain, RBD 7 101 IPR035979 GO:0003676
Mal7g2433 965 SUPERFAMILY RNA-binding domain, RBD 201 304 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2433 Mal-Chr7 84839556 84846115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2433 26 287 Eukaryotic Initiation Factors Gene Family AT4G34110 22.648 1.91e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2433 - - mtr:MTR_4g068120 1648.25