Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2429 ATGATATTCTTCTGGTTTTTGTGTTTCCCAGGACAAAAGAATGTGATTGGAGTTTCCCCACCGCGTTCTGGTAAGACCGTAGCTTTTGTTCTTCCTATACTCCACGCCCTTTTAGAAGCTCGACTCTACAGAAACACTTTCTTTGCTTGTGTAATCTCCGCCACAAGTGATAGTGCTCGTGAAGTTGCTCACCTGTTTGGAACTCTAGGTTCTCAATTCGGTGTCAAGTGTGCTTTCCTTGTTGAAGGGTATGACATGGTATACCAATCCACCGAGATAGCAAATCGACCTCATATCATTGTCGTAGATGAGGCAGACATGTTGTTGACTGATAACTTTGAGACACAACTTAATGAGATTATAGGAATGATGTCTAGTAAGCGAAGAACATTTCTTTTTTCATCTAAGATGACAAAGAAGGTCCATAAGATCCAAAAGATGTGTTTAAGGAATCCAAAGAAGTCAAAGAGACTTAAAGCTTTGGAAAAGTTAAAGTCTGGGGAGTGCAATATTCTCCTTTGTGATGATGTTGCTAGTAGGGGACCGGATATTCCAATGGTAGATACGGTGATTAACTATGACATTCCTAGAGATCCCAAAGATTATATACGTCGTGTGGGAAGGACGACTCGTTTTGGTGTTGCCATTTCCCTTATGGACGTTGATGAATTGGATCGACTCAAAATGATACAAGCACATATAGGTGATGAGTATATTATGCTCCTAACCTTTGCTTTTCCATTTTAA 747 0.4016 MIFFWFLCFPGQKNVIGVSPPRSGKTVAFVLPILHALLEARLYRNTFFACVISATSDSAREVAHLFGTLGSQFGVKCAFLVEGYDMVYQSTEIANRPHIIVVDEADMLLTDNFETQLNEIIGMMSSKRRTFLFSSKMTKKVHKIQKMCLRNPKKSKRLKALEKLKSGECNILLCDDVASRGPDIPMVDTVINYDIPRDPKDYIRRVGRTTRFGVAISLMDVDELDRLKMIQAHIGDEYIMLLTFAFPF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2429 248 CDD SF2_C_DEAD 153 218 - -
Mal7g2429 248 SMART helicmild6 143 213 IPR001650 -
Mal7g2429 248 Gene3D - 5 102 IPR027417 -
Mal7g2429 248 Pfam DEAD/DEAH box helicase 11 101 IPR011545 GO:0003676|GO:0005524
Mal7g2429 248 PANTHER BNAC02G41920D PROTEIN 11 101 - -
Mal7g2429 248 PANTHER BNAC02G41920D PROTEIN 154 235 - -
Mal7g2429 248 PANTHER BNAC02G41920D PROTEIN 100 154 - -
Mal7g2429 248 SMART ultradead3 3 167 IPR014001 -
Mal7g2429 248 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 108 248 IPR001650 -
Mal7g2429 248 Gene3D - 103 240 IPR027417 -
Mal7g2429 248 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 6 155 IPR014001 -
Mal7g2429 248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 233 IPR027417 -
Mal7g2429 248 Pfam Helicase conserved C-terminal domain 143 213 IPR001650 -
Mal7g2429 248 PANTHER RNA HELICASE 11 101 - -
Mal7g2429 248 PANTHER RNA HELICASE 154 235 - -
Mal7g2429 248 PANTHER RNA HELICASE 100 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2429 Mal-Chr7 84790596 84793573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2429 125 233 Eukaryotic Initiation Factors Gene Family AT3G19760 33.929 3.97e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2429 K14777 - elk:111142059 166.392