Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2405 ATGGATTCTGAGGATGATATGCATGATGCTAATGATATTGAGTCTCTTGAAGATGATGATTTCTACAGTGGTGATACGGAGATAGGTGGTATGGATTATTATAGTGATTATGATGATGATGCTGGTGATTACTTTGATGATGCTGATAAGATTGAGTCTCGTCGACCTGAGCAAAATTTTACAATCTTGAAGGAATCCGATATCCAAGTAAGACAGGAAGATGACATTGATAGAGTAGCAGCTGTTCTTTCTGTATCAAGAGTTATTGCAAGCATACTACTTCGTCACCACAATTGGAGCGTCAGTAAAGTGAATGATGCATGGTTTGCCGATGAAGAGCAAGTCCGAAAAGCAGTTGGCTTGTTGGATAAGCCAGTTGTCCAGCATCCTAATGCTAGAGAGCTTACATGTGGCATCTGTTTTGAAGACTATCCTCGTTCTGGGATTGGAATGGCTTCTTGTGGACATCCATACTGTTTCTCATGCTGGGAAGGATATATAAGTACGTCCATTAATGATGGTCCTGGATGTTTAATGTTGAGATGTCCTGAACCCACTTGTGGTGCTGCTATTGGTCAAGATATGATTGATTTATTAGCATCTAGTGAAGATAAACAAAAGTATGCCCGTTACCTTCGTAGATCTTATATCGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCCCCTGGTTGTGAATATGCAGTTACTTTTGATGCTGGAGGTGGAAACTATGATGTCTCTTGCCTCTGTTCGTATAGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGTAAAGTGGATTTTGAAAAACAGCGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATCACGTGCACTCCTCCCTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCGGACCATGGTGAAAGAACCGGTGGTTTTTATGCTTGCAATCGTTATGAAGCCGCTAAGCAAGAGGGAGTGTATGATGATACTGAAAGAAGAAGAGAAATGGCGAAGAATTCTTTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTAGATCAGATGCAAACTGTTCATATTGAGAGGCTTAGCGACACGCAGTGCCAACCTGAGTCACAGCTTAAGTTCATTACAGAGGCCTGGCTGCAGATAGTTGAGTGTAGGAGAGTGCTGAAATGGACGTATGCATATGGGTACTATTTACCTGAGCATGAGCGTGGAAAAAAACAGTTCTTTGAGTATTTACAAGGTGAAGCAGAATCTGGTCTAGAGAGACTTCATCAATGTGCTGAAAAAGAACTGCAGCAATTCCTCACTGCCGAAGCCGAAGGCCCATCTAAAGAATTCAATGACTTCCGTACAAAGTTAGCTGGATTGACTAGTGTGACTAAGAACTACTTCGAGAATTTGGTGAGAGCATTAGAGAATGGTCTAGCCGACGTGGATGTTAATGGAGCTTCCTTCAGCAAAGCAACTAGCTCAAAAAATGCTGCAGGGAGCAGCAAGGGGAGAGCTGGGAGAGGAAAGGGAGCATTGCGAATAACCAGAACTTCTGATGATGGTCAGTGGGGCTGCGAACATTGTACCTCCATGAATCTCAAATCTGCCACCACATGCCAGATTTGCAATCAACGTCGATGA 1761 0.4316 MDSEDDMHDANDIESLEDDDFYSGDTEIGGMDYYSDYDDDAGDYFDDADKIESRRPEQNFTILKESDIQVRQEDDIDRVAAVLSVSRVIASILLRHHNWSVSKVNDAWFADEEQVRKAVGLLDKPVVQHPNARELTCGICFEDYPRSGIGMASCGHPYCFSCWEGYISTSINDGPGCLMLRCPEPTCGAAIGQDMIDLLASSEDKQKYARYLRRSYIEDNKKSKWCPAPGCEYAVTFDAGGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVVKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLDQMQTVHIERLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHERGKKQFFEYLQGEAESGLERLHQCAEKELQQFLTAEAEGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADVDVNGASFSKATSSKNAAGSSKGRAGRGKGALRITRTSDDGQWGCEHCTSMNLKSATTCQICNQRR* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2405 586 CDD RING-HC_RBR_TRIAD1_like 137 187 - -
Mal7g2405 586 MobiDBLite consensus disorder prediction 1 25 - -
Mal7g2405 586 ProSiteProfiles Zinc finger RanBP2 type profile. 559 586 IPR001876 -
Mal7g2405 586 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 537 IPR031127 GO:0004842|GO:0016567
Mal7g2405 586 ProSiteProfiles TRIAD supradomain profile. 133 346 IPR044066 -
Mal7g2405 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 217 IPR013083 -
Mal7g2405 586 ProSiteProfiles Zinc finger RING-type profile. 137 181 IPR001841 -
Mal7g2405 586 MobiDBLite consensus disorder prediction 531 551 - -
Mal7g2405 586 Pfam IBR domain, a half RING-finger domain 206 268 IPR002867 -
Mal7g2405 586 Pfam IBR domain, a half RING-finger domain 285 333 IPR002867 -
Mal7g2405 586 SUPERFAMILY RING/U-box 207 275 - -
Mal7g2405 586 ProSitePatterns Zinc finger RanBP2-type signature. 563 582 IPR001876 -
Mal7g2405 586 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 537 - -
Mal7g2405 586 Gene3D - 264 521 - -
Mal7g2405 586 MobiDBLite consensus disorder prediction 1 27 - -
Mal7g2405 586 SUPERFAMILY RING/U-box 287 335 - -
Mal7g2405 586 SMART ibrneu5 206 268 IPR002867 -
Mal7g2405 586 SMART ibrneu5 281 342 IPR002867 -
Mal7g2405 586 Pfam Ariadne domain 355 518 IPR045840 -
Mal7g2405 586 SUPERFAMILY RING/U-box 133 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2405 Mal-Chr7 84538028 84545234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2405 18 586 ARIADNE family AT1G65430 68.621 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2405 K11968 - gmx:100784195 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0466 4 4098243 4105786 Mal7g2405 7 84538028 84545234 PCT