Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2388 ATGGCGCCGAAGAGGACATCAAGAGGAAAACAAAAACGAGAAATGAAGAAGATTGAGAGAAAGCAAGATCTTTTTGTAGCATTTACAAAGAGAAGGTCAGGCATTTACAACAAAGCCTCTGAACTATCAACACTTTGTGGGGCTTCAGTTGATATTCTTATGATTTCTCCAGGAGGAAAACCATTTTGCTATGGAGAACCTTCTTCTAAATCCATAGCTAGAACTAGTTTGAAGGATGAAAATATTTCAATAGAAGAGGAATTAAAGAAACTAAAGATCACAGAACTTAATACAAAAATTGATGATCTTTTGGATAAAAAGAATGTTGCGGAAGCTCAACGTGAAAATTTGAAGACATTAAAAAGTCATGGATATTGGTCGATCAAAGAGGAAGATGTTGAAAGCTTTGACTATGACCAAGTAAAAAAGGTGGACACATCTTTAGTGGGTATCACAAATAAATTGATAAATAATGTCTTAAGCAATGGAGGAGAGATTAACCCTCATGCTCATAGTTCCCCCCTTTATGATTCAAATGGTAAAGGCAAGGTTGGTATTGCTTCTCTTGACCCTACAAATCAAGCACAAGGACTCTACCATGTTGGTGAAATGGAGAGTGGAAATGGAAGTGGCGTTGGTCATGCTCCTCGAGATATATGA 660 0.3697 MAPKRTSRGKQKREMKKIERKQDLFVAFTKRRSGIYNKASELSTLCGASVDILMISPGGKPFCYGEPSSKSIARTSLKDENISIEEELKKLKITELNTKIDDLLDKKNVAEAQRENLKTLKSHGYWSIKEEDVESFDYDQVKKVDTSLVGITNKLINNVLSNGGEINPHAHSSPLYDSNGKGKVGIASLDPTNQAQGLYHVGEMESGNGSGVGHAPRDI* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2388 219 PANTHER MADS BOX PROTEIN 7 133 - -
Mal7g2388 219 PANTHER AGAMOUS-LIKE 58-RELATED 7 133 - -
Mal7g2388 219 Gene3D - 21 90 IPR036879 GO:0003677|GO:0046983
Mal7g2388 219 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mal7g2388 219 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mal7g2388 219 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mal7g2388 219 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mal7g2388 219 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mal7g2388 219 Coils Coil 74 120 - -
Mal7g2388 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mal7g2388 219 SUPERFAMILY SRF-like 9 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2388 Mal-Chr7 84048006 84049144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2388 5 156 Type I MADS-box Gene Family AT4G36590 32.335 1.42e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal7g2388 SRF-TF 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2388 - K12412 rcu:8264143 111.694