Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2304 ATGAATTCAGAAACCCAATCCGAAACGCCGTCGTATTGGTGCTACAGTTGCACACGCTTCATCAACCTATCAGATCACACCCTCATCGTCTGTCCTCACTGCGATAACGGTTTCGTCGAAGAGATCGCCGCCGGCGAGTCACCTCACCACCGTCTCAGTCCTTTAAACGACGACAACACCGCTTCTTCCCGCCGACAAGGCTTCCGCCGCCGACGTCGTGACGCTGGTAGTCGTTCACCTTTCAACCCTGTCATCGTGCTTCGCGGCGCCGGTGACGATGTTGCCGGCGAAGACGGCAACACTGGTAGTGCTTTTGAACTTTTCTATGATGACGGTGATGGTTCTGGTCTTCGTCCTTTACCACCGACGGTTTCTGAGTTTTTACTCGGATCTGGATTCGATCGGTTGTTGGAGCAGTTTTCGCAGATCGAGATGAACGGTTTTGGTCGGCCGGAGAATCCACCGGCGTCAAAAGCAGCGATTGAATCGATGCCGACGGTTGAGATCTGTGAAGATCACGTTAGTTGTGAATTACACTGCGCCGTTTGCAAAGAAGAGTTTGAGCTACGCGCTGAGGCGCGTGAGTTGCCTTGCAAACATTTATACCATTCCGATTGCATTCTTCCATGGCTGACAGTGCGAAACTCGTGCCCGGTGTGCCGCCATGAGCTTCCTTCGGATCTTAATAACCCGTTGGAAACTAGGGTTTCGGGTCAAATCGATGAAGAAGCGATTGGGTTAACGATATGGAGGTTACCCGGTGGTGGATTCGCTGTTGGGAGATTCTCCGGTGGAAGAAGTGCCGGGGAGAGTCATTTTCCAGTTGTGTATACCGAGATGGATGGTGGGCTCAATGCTGCAAATGGAGCTCCGAGGAGAATTTCTAGAACGGTTAGAAGTCATAGGGTTAGGGAAAGTCATGGAATTGGAAGAGTTTTTCGGAATTTTTTCTCATTCTTTGGGAGAATTGGTTCTAGGTCAAATTCGAATTCGGGTTCTGAGAATGTTGCTTCTGTGAGTAGAAGCCGTAGCTTAGTGAATTCAATGTTCAATAGAAACTCGCGGCGACGTAGGAGAGTTTTGGAGTTGGAAGATTGA 1098 0.5 MNSETQSETPSYWCYSCTRFINLSDHTLIVCPHCDNGFVEEIAAGESPHHRLSPLNDDNTASSRRQGFRRRRRDAGSRSPFNPVIVLRGAGDDVAGEDGNTGSAFELFYDDGDGSGLRPLPPTVSEFLLGSGFDRLLEQFSQIEMNGFGRPENPPASKAAIESMPTVEICEDHVSCELHCAVCKEEFELRAEARELPCKHLYHSDCILPWLTVRNSCPVCRHELPSDLNNPLETRVSGQIDEEAIGLTIWRLPGGGFAVGRFSGGRSAGESHFPVVYTEMDGGLNAANGAPRRISRTVRSHRVRESHGIGRVFRNFFSFFGRIGSRSNSNSGSENVASVSRSRSLVNSMFNRNSRRRRRVLELED* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2304 365 MobiDBLite consensus disorder prediction 48 80 - -
Mal7g2304 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 6 310 - -
Mal7g2304 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 6 310 - -
Mal7g2304 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 227 IPR013083 -
Mal7g2304 365 SMART ring_2 180 220 IPR001841 -
Mal7g2304 365 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
Mal7g2304 365 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Mal7g2304 365 SUPERFAMILY RING/U-box 160 228 - -
Mal7g2304 365 CDD RING-H2_RNF126_like 180 221 - -
Mal7g2304 365 Pfam Ring finger domain 179 221 IPR001841 -
Mal7g2304 365 Pfam Protein of unknown function (DUF1117) 245 355 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2304 Mal-Chr7 81115846 81116943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2304 119 227 C3H Transcription Factor Family AT5G01980 49.541 2.60e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2304 - - gmx:100792874 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g2304 7 81115846 81116943 Mal7g2304 7 81115846 81116943 ECH
Mal4g0527 4 5056591 5057673 Mal7g2304 7 81115846 81116943 ECH
Mal3g1989 3 81893618 81894931 Mal7g2304 7 81115846 81116943 ECH
Mal4g0527 4 5056591 5057673 Mal7g2304 7 81115846 81116943 PCT