Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2269 ATGGAGGGAACTACATCATTCTCTTCAACACATGATGATCATGATGAAGAAATATTTCCAATATCTGATGAGAAATATGCAGAGGAATTACAATTACAAGAAGCATTATTATTTTCCACTATAGTTGTGAAAAAAGAAATCCAAGTAGTGGATGTAAAAGTTGAAGCTGAAACTAATAGTAACACTCCATTGCGAGACCTTAAACAAAAACAGAAAGAGACTTTTAAAGATGAATCTTCTTCTTCGCAATTGAAACAATATTTTTGTGCTATCTGTATGGAAACTAACCCTGTTGAAGAAATGTTCGAAAACCGAAAGTGTTCACACTCTTTTTGTAAAGATTGTGTTGGAAAATATCTAGCTACAAAAATTCAAGAGAGTATATCAATGGTAAAATGTCCTGATCCAAAATGTAATGATATTTTGGAGCCTCATGATTGTAGTTCAATTTTACCAAAGGATGTGTTTGATAGATGGGAAAATGCACTTTGTGAGAATATGGTATTAGGTTCACAAAAATTTTATTGTCCTTTTAAAGATTGTTCAGCTATGTTGTTGAATGATGAAAAGGAAACTGTGACTGTTTCGGAATGTCCACATTGTCATAGATTGTTCTGTGCACAATGTAAGGTTTCATGGCACACAGGTGTTGATTGTAAAGAGTTTCAAAGCTTGGGAGACGGCGAGCGAGGGAGGGAAGATCTAATGGCCATGGAACTTGCTAAAAACAAGCGATGGAAAAGATGTCCGAAATGCGGCTTATATGTGGAAAAAATTGTGGGATGTACTCGCATTTCATGCAGGTATAGACAATTCTCTTTTACGATGCAAATTAAATTAATTCTATGTTATGCATGTACTTTTGTCGATTTATGA 876 0.3436 MEGTTSFSSTHDDHDEEIFPISDEKYAEELQLQEALLFSTIVVKKEIQVVDVKVEAETNSNTPLRDLKQKQKETFKDESSSSQLKQYFCAICMETNPVEEMFENRKCSHSFCKDCVGKYLATKIQESISMVKCPDPKCNDILEPHDCSSILPKDVFDRWENALCENMVLGSQKFYCPFKDCSAMLLNDEKETVTVSECPHCHRLFCAQCKVSWHTGVDCKEFQSLGDGERGREDLMAMELAKNKRWKRCPKCGLYVEKIVGCTRISCRYRQFSFTMQIKLILCYACTFVDL* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2269 291 SUPERFAMILY RING/U-box 85 166 - -
Mal7g2269 291 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 5 287 - -
Mal7g2269 291 Pfam IBR domain, a half RING-finger domain 158 219 IPR002867 -
Mal7g2269 291 Gene3D - 174 220 - -
Mal7g2269 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 171 IPR013083 -
Mal7g2269 291 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 5 287 IPR031127 GO:0004842|GO:0016567
Mal7g2269 291 ProSitePatterns Zinc finger RING-type signature. 107 116 IPR017907 -
Mal7g2269 291 SUPERFAMILY RING/U-box 165 223 - -
Mal7g2269 291 Gene3D - 221 287 - -
Mal7g2269 291 ProSiteProfiles TRIAD supradomain profile. 85 291 IPR044066 -
Mal7g2269 291 Pfam RING-type zinc-finger 89 134 IPR027370 -
Mal7g2269 291 ProSiteProfiles Zinc finger RING-type profile. 89 137 IPR001841 -
Mal7g2269 291 SMART ibrneu5 157 219 IPR002867 -
Mal7g2269 291 SUPERFAMILY RING/U-box 230 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2269 Mal-Chr7 80406967 80409600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2269 89 286 C3H Transcription Factor Family AT2G19610 23.671 5.30e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2269 K11975 - gmx:100816161 344.739