Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2199 ATGGCTCCGAGATACGACAACGTTAATGATATTTCTTCTGCAAAGGAAAACTGGAATATCATGGTGCGGGTCGTTCGACTATGGTTTGTTAAGGATATGAACAAAGACAAGTTACCTTATTCATTGGAAATGATTCTGATGGATAAAAAGGGTGAACGAATTCACGCATTTGTTAGACGTACTCTGATCTACAAATATGAGAAAGAATTGACTGAAGATCGTGTGTATTCTATTGGAAATTTCAGTGTTGCTTCTAATGTGGGGTCCTATAGGACAACACGACATCCATACAAGATTAACTTTCAGTATGGAACCAAGATCAAACAATGTGATCAAAAATTGGTCCCTGCTGACATGTACAAGATCAATGATCCTCGAGAGATATTTCAATCTGGATATGATACGGATTATTTGATTGATGTCATGGGAATCTTGAAAGCAGTCGGTGTTGAGAAGTCCTATACCCGCAACGGGAGTCAATCCAAAATGATTCCCATCGAGTTGGATTATGATGGGTTTCGTTTCAAGGTTACTTTGTTTGGATCGTATGTGGACGAATTGAATGCTTTTGTAGCATCTGGTGAGACGGATAATGTTGTGGTTGCCGTCCTTTTGACCAAAATCAAGCTATTTCAAGGTCAGGCGACTATACAGAATACCCTTTATGCTACAAAAATGATGTTCAACCCAACTTTCTCAGCTGCAGTGAATTTAAAGAAAATGACTGTCGAGAATGATAATTCTCCTTCTCCTGGTATTTCTAAGATTGTGGATGCATCTAAAGTTAGTATTGAGGAAGACTTTCTCAATTTGACACCGATGACCACCATTGAAGGGCTTAAGGATTGTGCAACGGTATTATATCCTGATGAACGGATGTACTTTTGTTCAAAGTGCAATAAACATGTGTTGAATGTGACACTGAGGTTCATGATCAAGATTAGAGTTATTGATCATACCGACTCAGTTACGTTTGTGCTATTTGACCGCAATGCTTCTGAATTATTTAAAAAGTCGTGTGTTGAAATGCTCGACTCTGATGGAATGGGAAATGATGCGTCTAATATCCCCCAAGAAATTGCTGATATGGTGGGGAAATCATACCTGTTCAAAGTGGAGTCAAATATTAATTTTGTTGTTATGTATGAGAAATCATATCGGGTGAAGAAAGTTGCATCGGATCCTGTATTAGTTGGGAAGTTTAAGACTAAATATGATGATTTGATGAAGAATGGTCGTGAAGATGATGTTGGTTTGGATGATGGTGTTGCTGATCATGGTGAAGATATTGTTGCTCTGGTATGTGTTCTTAAAATATTAGTGATATCATGA 1332 0.3791 MAPRYDNVNDISSAKENWNIMVRVVRLWFVKDMNKDKLPYSLEMILMDKKGERIHAFVRRTLIYKYEKELTEDRVYSIGNFSVASNVGSYRTTRHPYKINFQYGTKIKQCDQKLVPADMYKINDPREIFQSGYDTDYLIDVMGILKAVGVEKSYTRNGSQSKMIPIELDYDGFRFKVTLFGSYVDELNAFVASGETDNVVVAVLLTKIKLFQGQATIQNTLYATKMMFNPTFSAAVNLKKMTVENDNSPSPGISKIVDASKVSIEEDFLNLTPMTTIEGLKDCATVLYPDERMYFCSKCNKHVLNVTLRFMIKIRVIDHTDSVTFVLFDRNASELFKKSCVEMLDSDGMGNDASNIPQEIADMVGKSYLFKVESNINFVVMYEKSYRVKKVASDPVLVGKFKTKYDDLMKNGREDDVGLDDGVADHGEDIVALVCVLKILVIS* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2199 443 PANTHER REPLICATION FACTOR A 1, RFA1 20 344 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal7g2199 443 SUPERFAMILY Nucleic acid-binding proteins 131 241 IPR012340 -
Mal7g2199 443 CDD RPA1_DBD_C 290 397 IPR013955 -
Mal7g2199 443 Gene3D - 6 112 IPR012340 -
Mal7g2199 443 SUPERFAMILY Nucleic acid-binding proteins 282 381 IPR012340 -
Mal7g2199 443 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 344 - -
Mal7g2199 443 Gene3D - 272 401 IPR012340 -
Mal7g2199 443 Pfam Replication factor-A C terminal domain 290 377 IPR013955 -
Mal7g2199 443 SUPERFAMILY Nucleic acid-binding proteins 5 111 IPR012340 -
Mal7g2199 443 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Mal7g2199 443 CDD RPA1_DBD_B_like 140 232 - -
Mal7g2199 443 CDD RPA1_DBD_A_like 20 107 - -
Mal7g2199 443 Gene3D - 115 249 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2199 Mal-Chr7 78265390 78268690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2199 3 343 Core DNA Replication Machinery Family AT4G19130 20.312 3.05e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2199 - - mtr:MTR_2g048560 674.855