LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal7g2170	ATGTTAGATCTTAATCTAAACGATTCAAACTCAACCGATTCAACTCAGAATCAGAACAACGACTCATCAATGATATCAGAGAAGTTTCCGCAAATGGTGGATGAATCAGGAACATCGAATTCCTCAATCGTCAATGCGGACGGTGACGAAGACTCGTGTTCCACGCGCGTTTTCACTTTCAGTTTCGATATTCTGAAAATGGAAGGTTCGAATTCAAACGACGTCGTAACGAAGGAGTTTTTCCCTGTGAAGTTGCAAGCTACGTCGTCGTCGTCGTCGTTTTCGATGAGAAACGGTTCGGTTGATTTGTCGTTTAATCAGAATGAAGAGATGAAGATTGTTCAAGCGCCACAACCAGCTAAAAAGAGTAGAAGAGGACCTAGGTCTCGAAGTTCGCAATACAGAGGTGTTACGTTTTATCGCAGGACTGGTAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTTTATTTAGGTGGATTTGACACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTTAGGGGAGTTAGTGCTGATATAAATTTCAATTTGAATGATTATGATGATGATCTTAAACAGACGAAGAATTTATCGAAAGAGGAATTCGTGCACATACTCCGTCGACAAAGTACTGGTTTCTCAAGAGGGAGTTCAAAGTACAGAGGAGTAACGCTGCATAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGATAAAGCAGCTATTCAAAACAATGGAAGTGAAGCAGTGACTAACTTTGAGCCCTGTACATACGAAGGAGAGATGAAATCCGCAGCCATCAATGACGGTGGCTGTCAAAATCTTGATCTCAATTTGGGCATAGCCACACCAGGAGCTGGTCCCAAAGAAAATCCGGGGCAATTTCACTTCCCCTCTGTCCCTTACACCATGCAAGCTGGAAGAAATTCAAGGATGGAAACCAATGTTTCAGGTATCGGTAATCCATCTTTGAAAAGGCTATTAGTAACTGAAGAACGTCATTCCTTATGGAATGGCATGTATCCTGCTTTCTTTCCCAATGAGGAAACAGCAGATAGTATCAACAAAATTCCTTCAAAAAGACTCCCCAATTGGGCGTGGCAACCTCATGGCCAGGTCACTGCTACCTCAGTGCAACCAATCTCTGCAGCAGCAGCAGCATCATCAGGATTCTCCATTTCAGCTCCCTTTCAATCGACTCCCATATTTCCACCAAGATCGATGAACTCAATTCCCCAGAGTCTCTATTTTACTTCGCCCAAAGCACCTAACAGCAACACATCTCACTACTATTATCAGGTTAAGCCCCCGCAAGCACCACCCTAG	1365	0.4381	MLDLNLNDSNSTDSTQNQNNDSSMISEKFPQMVDESGTSNSSIVNADGDEDSCSTRVFTFSFDILKMEGSNSNDVVTKEFFPVKLQATSSSSSFSMRNGSVDLSFNQNEEMKIVQAPQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVSADINFNLNDYDDDLKQTKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIQNNGSEAVTNFEPCTYEGEMKSAAINDGGCQNLDLNLGIATPGAGPKENPGQFHFPSVPYTMQAGRNSRMETNVSGIGNPSLKRLLVTEERHSLWNGMYPAFFPNEETADSINKIPSKRLPNWAWQPHGQVTATSVQPISAAAAASSGFSISAPFQSTPIFPPRSMNSIPQSLYFTSPKAPNSNTSHYYYQVKPPQAPP*	455

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mal7g2170	454	CDD	AP2	133	188	IPR001471	GO:0003700\|GO:0006355
Mal7g2170	454	SUPERFAMILY	DNA-binding domain	224	267	IPR016177	GO:0003677
Mal7g2170	454	MobiDBLite	consensus disorder prediction	433	454	-	-
Mal7g2170	454	ProSiteProfiles	AP2/ERF domain profile.	133	189	IPR001471	GO:0003700\|GO:0006355
Mal7g2170	454	MobiDBLite	consensus disorder prediction	1	23	-	-
Mal7g2170	454	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	1	416	-	-
Mal7g2170	454	CDD	AP2	224	267	IPR001471	GO:0003700\|GO:0006355
Mal7g2170	454	MobiDBLite	consensus disorder prediction	112	134	-	-
Mal7g2170	454	Pfam	AP2 domain	133	181	IPR001471	GO:0003700\|GO:0006355
Mal7g2170	454	SMART	rav1_2	133	195	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal7g2170	Mal-Chr7	77480454	77483997	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal7g2170	1	454	AP2-EREBP Transcription Factor Family	AT5G60120	44.646	4.62e-99	303

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Mal7g2170		AP2	6.4e-10	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal7g2170	K09284		-	gmx:100788303	630.172

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal7g2170	7	77480454	77483997	Mal7g2170	7	77480454	77483997	ECH
	Mal4g0734	4	8200641	8204433	Mal7g2170	7	77480454	77483997	PCT

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