Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2152 ATGGACACAACCCAAGAAGAAGACTTTCACTTCTTGTTAACGGCGCAACGCCACGAACTCACGGCGGCGGAAGCCATGGATTCCGATCTCGAATTCGCTTACCGTCTCCAGCTTCAAGAAGCTCTCACCGCTTCCCTCACCGACCAACCCTCCTCCTCCACCGCCGCCATTCTCGAAGACCCATCCATCTCCGATTCCTTTTTCAACGCTAACTCTCTCCACTTACAAGAGCTCGAAAGATTGGAAATCGAGATGAACGACAGAGAACAAAGCGAAAGAGCAATGCGTGAAGCCAAGGAAGATCTCAACCGTCGGATTCACGATCAGAAAATGGCGTCGGAGATTTTCAACATGCCGATGGAGGATTGGGATGAATGGGGTGATAATTTCGAGAAACCTTTCGGCGAAGGAACTTCGTCGAACCGGAACAACGATGAAGGTCCGGTTGTTAGGGTTTATTTTAAGGGTTTAGTGAGTGAGGAGTTTGTGAGGGGTGAGAAAGTTTTGTTGGCTGGGATTGGTGTTGCGGTTTGTGATTCTGAGGATAATTTGATATTGGAAATTTCTAAGGGCGTTGTTGGAAATGGGAGTAGTAAAATTGCTATGGAGCTTAAGGCTTTGATTGAAGCTTTCAATGCTGTTATTGCTTTGGATTTGAAGCGTGTTATTTATTTTGGTGATTATTACACACTTTTCCAATTTTTAAGTGGAAAATGGACTGCAAAGCAGCAGAAGGTTGCTACGCTAGTTAATCAGGTGAATGTGCTTCAAAGAAAATTTGCGTACTGCAGTCCAAGGCTTGTGGCGAGGCACGATCTGAAATTCGCATTTAAGCTTGCAAGAGATGCAATTGTTTCTCAATCCACGAGGCCTGCTGAATCTAGTGGTGTAAAGAGTCTGAATGAAACTTGTGTCATTTGTTTGGAGGATACTGATGTTAGTCAATTTTTTTCAGTTGATGGCTGTCAACACAGGTATTGCTTTTCTTGCATGAAGCAACATGTGGAGGTGAAGTTGCTCCATGGAATGGTGCCAATATGCCCTCACGAGGGATGCAAGAATGAACTTCTAGTTGACAGTTGCCGGAAATTCTTGACTTCTAAATTAGTTGAAACCATGCAGCAACGAAATTTGGAAGCTTCAATTCCGCTTACGGAGAAAATTTACTGTCCTTATCCAAGATGCTCTGCATTGATGTCAAAAAGTGAAGTTTTAGATTACTCCAAAGGTCTGATGGGTTCTGTACAATCAATGCCCAAGAAATGTGTAAAATGTCATGGTCTTTTCTGTTTCGGCTGCAAGGTCCCTTGGCATAGTGGTATGACATGTTATACCTACAAAAGGTTGAATCCTAACCCTCCAGCAGATGATGTGAAGTTGAAGTCTCTGGCATCAAGGAGTCTTTGGAGGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCCACCACATGACTTGCAGATGCGGTTACGAATTTTGCTATAAATGTGGAGCTGAGTGGAAGGACAAAAAAGCAACATGTTCTTGTCCACTTTGGGAAGAGGACAATATTTGGTTACAAGATCGTGATGGTGAGTCAGATGAAGAGGATTTAAATGATGTAGAGGATTTCAATTCTGAAGATTATTATTATTAG 1647 0.4311 MDTTQEEDFHFLLTAQRHELTAAEAMDSDLEFAYRLQLQEALTASLTDQPSSSTAAILEDPSISDSFFNANSLHLQELERLEIEMNDREQSERAMREAKEDLNRRIHDQKMASEIFNMPMEDWDEWGDNFEKPFGEGTSSNRNNDEGPVVRVYFKGLVSEEFVRGEKVLLAGIGVAVCDSEDNLILEISKGVVGNGSSKIAMELKALIEAFNAVIALDLKRVIYFGDYYTLFQFLSGKWTAKQQKVATLVNQVNVLQRKFAYCSPRLVARHDLKFAFKLARDAIVSQSTRPAESSGVKSLNETCVICLEDTDVSQFFSVDGCQHRYCFSCMKQHVEVKLLHGMVPICPHEGCKNELLVDSCRKFLTSKLVETMQQRNLEASIPLTEKIYCPYPRCSALMSKSEVLDYSKGLMGSVQSMPKKCVKCHGLFCFGCKVPWHSGMTCYTYKRLNPNPPADDVKLKSLASRSLWRQCVKCNHMIELAEGCHHMTCRCGYEFCYKCGAEWKDKKATCSCPLWEEDNIWLQDRDGESDEEDLNDVEDFNSEDYYY* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2152 548 Coils Coil 78 101 - -
Mal7g2152 548 Pfam IBR domain, a half RING-finger domain 374 443 IPR002867 -
Mal7g2152 548 Pfam IBR domain, a half RING-finger domain 461 511 IPR002867 -
Mal7g2152 548 SUPERFAMILY RING/U-box 302 383 - -
Mal7g2152 548 SMART ibrneu5 456 513 IPR002867 -
Mal7g2152 548 SMART ibrneu5 371 443 IPR002867 -
Mal7g2152 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 383 IPR013083 -
Mal7g2152 548 ProSiteProfiles Zinc finger RING-type profile. 304 348 IPR001841 -
Mal7g2152 548 SUPERFAMILY RING/U-box 458 520 - -
Mal7g2152 548 ProSitePatterns Zinc finger RING-type signature. 322 331 IPR017907 -
Mal7g2152 548 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 524 IPR031127 GO:0004842|GO:0016567
Mal7g2152 548 MobiDBLite consensus disorder prediction 526 548 - -
Mal7g2152 548 Gene3D - 440 546 - -
Mal7g2152 548 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 29 524 - -
Mal7g2152 548 Pfam Reverse transcriptase-like 170 283 IPR002156 GO:0003676|GO:0004523
Mal7g2152 548 ProSiteProfiles TRIAD supradomain profile. 300 523 IPR044066 -
Mal7g2152 548 Gene3D - 150 290 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2152 Mal-Chr7 76974740 76978994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2152 151 502 C3H Transcription Factor Family AT2G19610 34.916 1.18e-67 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2152 - - gmx:100790037 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g2152 7 76974740 76978994 Mal7g2152 7 76974740 76978994 ECH