LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal7g2075	ATGGCTTCAGAAGATTCAAAATTTTTTAGATTTGAAGGTGATCATCTTGAACTAGCTAAACTCACATCACATAATGGTGACAACGACGAAAAACAAGTCGCTCCTAGAGTATTGTCAAGAGTGTTCTCAGAAGACTACAAGAGAGTGAGAAGAAGAAGAAGAAGAATATTTGATCCTAGGGGACAAACCATTCACCAATGGAACAAGATTTTCTTGGTAGCATGCTTAATTTCTTTGTTTGTGGATCCTCTCTTCTTTTATTTGCCAATAGTTCAAGATGAAGTGTGCATTGATATTGGAATAGCAGTTGAAGTTTTCCTCATAGTTGTCAGATCGATTGCGGATGTCTTTTATGTCATTCACATATTCATGAGGTTTCATACAGCATATATTGCTCCTTCTTCTAGGGTTTTTGGGAGAGGAGAACTTGTTATAGACTCTTCTAAGATAGCTACTAGGTACTTGCACAAGGGTTTCTGGTTGGACTTTTTTGCTGCCTTGCCCCTACCTCAGGTGTTAATTTGGATTGTCATACCTAATCTTGGAGGTTCAACCATTGCAAACACAAAAAATGTCCTTAGATTCATCATCATTTTACAATATTTGCCAAGGCTATTTCTCATTTTTCCACTTTCATCACAAATTGTAAAAGCTACAGGGGTTGTCACAGAAACAGCATGGGCAGGAGCTGCTTATAACTTGATGCTTTACATGTTGGCAAGTCATGTTTTAGGGGCATGCTGGTATCTTCTATCAATTGAAAGACAAGAAGCATGCTGGAAGAGTGTCTGCAAACTGGAGGAGTCATCTTGTGAATTTGAATTTTTTGACTGTAACAGGGTTAAAGATTCCCTCAGGGTGTCTTGGTTTATAACAAGTAATATCACAAATTTATGTTCACCAAATGCACTCTTTTATCAGTTTGGTATATATGGTGATGCAGTGACATCCAAAGTTACAACCTCTGCATTCTTTAATAAGTACTTATTTTGTCTCTGGTGGGGCCTAAGGAATCTGAGTTCTTTGGGACAAGGTCTTCTTACTAGCACTTTTGTTGGAGAAATAATGTTTGCTATTGTTGTTGCAACCTTTGGATTGGTTCTTTTTGCATTGCTCATTGGTAATATGCAGACATACCTACAATCAACAACAGTCCGGTTAGAAGAGTGGAGGGTCAAAAGAACAGACACGGAACAATGGATGCATCACAGACAACTACCTCAAGAACTAAGGCAATCCGTGCGTAAGTACGATCAATATAAATGGGTAGCTACACGAGGCGTAGATGAAGAATCTCTTCTCAAAGGACTTCCATTGGATCTTCGAAGAGACATTAAACGTCACCTTTGTCTTGAACTAGTTCGAAGAGTTCCATTGTTTGACGCAATGGATGAGAGGATGCTAGATGCAATATGCGAAAGACTAAAGCCTGCACTATGCACTGAGAATACTTATCTAGTTCGTGAAGGGGATCCTGTAAACGAAATGCTATTCATAATAAGAGGACATCTTGATTCCTACACCACCGATGGAGGCCGCACTGGTTTCTTCAACTCGTGTTGTATTGGTCCAGGTGATTTCTGTGGTGAGGAGCTATTGACATGGGCGTTGGATCCACGACCTACTATGGTAATTCCTTCTTCAACTCGAACGGTTAAAGCCATATCTGAAGTAGAAGCCTTTGCACTTATAGCAGAAGACTTGAAGTTTGTTGCATCTCAGTTTAGAAGGCTGCATAGCAAGCAATTGAGGAACAAGTTAAGGTTTCACTCGCACCAATGGAGAACGTGGGCTGCTTGTTTTATACAAGCAGTTGTTAAAATGGAGGTCAATGTTGAATGTGACTCATATTCACTCAAGCGTATGAGATTTAAGAGTAAACATGTAAATTAA	1893	0.3941	MASEDSKFFRFEGDHLELAKLTSHNGDNDEKQVAPRVLSRVFSEDYKRVRRRRRRIFDPRGQTIHQWNKIFLVACLISLFVDPLFFYLPIVQDEVCIDIGIAVEVFLIVVRSIADVFYVIHIFMRFHTAYIAPSSRVFGRGELVIDSSKIATRYLHKGFWLDFFAALPLPQVLIWIVIPNLGGSTIANTKNVLRFIIILQYLPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQEACWKSVCKLEESSCEFEFFDCNRVKDSLRVSWFITSNITNLCSPNALFYQFGIYGDAVTSKVTTSAFFNKYLFCLWWGLRNLSSLGQGLLTSTFVGEIMFAIVVATFGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPQELRQSVRKYDQYKWVATRGVDEESLLKGLPLDLRRDIKRHLCLELVRRVPLFDAMDERMLDAICERLKPALCTENTYLVREGDPVNEMLFIIRGHLDSYTTDGGRTGFFNSCCIGPGDFCGEELLTWALDPRPTMVIPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRNKLRFHSHQWRTWAACFIQAVVKMEVNVECDSYSLKRMRFKSKHVN*	631

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal7g2075	630	Pfam	Ion transport protein	67	386	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Mal7g2075	630	Gene3D	Jelly Rolls	457	577	IPR014710	-
	Mal7g2075	630	PANTHER	PROTEIN CNGC15A	23	605	-	-
	Mal7g2075	630	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	23	605	-	-
	Mal7g2075	630	Gene3D	Helix hairpin bin	386	450	-	-
	Mal7g2075	630	SUPERFAMILY	cAMP-binding domain-like	389	587	IPR018490	-
	Mal7g2075	630	SMART	cnmp_10	459	590	IPR000595	-
	Mal7g2075	630	Gene3D	-	70	383	-	-
	Mal7g2075	630	ProSiteProfiles	cAMP/cGMP binding motif profile.	459	556	IPR000595	-
	Mal7g2075	630	PRINTS	EAG/ELK/ERG potassium channel family signature	354	365	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Mal7g2075	630	PRINTS	EAG/ELK/ERG potassium channel family signature	372	381	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Mal7g2075	630	PRINTS	EAG/ELK/ERG potassium channel family signature	328	345	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Mal7g2075	630	PRINTS	EAG/ELK/ERG potassium channel family signature	422	429	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Mal7g2075	630	PRINTS	EAG/ELK/ERG potassium channel family signature	239	249	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Mal7g2075	630	PRINTS	EAG/ELK/ERG potassium channel family signature	122	131	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Mal7g2075	630	CDD	CAP_ED	459	590	IPR000595	-
	Mal7g2075	630	SUPERFAMILY	Voltage-gated potassium channels	58	381	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal7g2075	Mal-Chr7	74354620	74358425	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal7g2075	31	605	Ion Channels	AT2G28260	77.217	0.0	957

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal7g2075	K05391		-	gmx:100791992	1013.45

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal7g2075	7	74354620	74358425	Mal7g2075	7	74354620	74358425	ECH
	Mal4g0665	4	7058203	7061770	Mal7g2075	7	74354620	74358425	PCT