Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2040 ATGAAAGTCATTCTTCCCTCACCCATTCATGATACTCAAATAAGAATTCCAGATGAGTTTATAACGAGATTTAGGAATGAACTCAAGAATGTTGCTACAATTGTTGTTCCTGATGGTTGTGATTGGGAAATGGAACTGAAGAAATGCAGAAACGATGTTTACTTTTGCAACAAATGGCAACAGTTTGCAGAATACTATTCTATAGTGTATGGTTCCTACCTGTGTTTCAAATACGAAGGGAATTCAAAGTTTAGTGTCGTTATATTTGATGCAACTTCTGCTGAAATTTGCTATCCATTCAAAAGTCAAAGTACCAATGGAGAAACAAGCACAAAGTGTCGTAGTCCTAGGAAAAGGTCCAAGGTTGGAACTAGTGAGAACCTTGGGGAAAATGTCAAAAGCATGTCTAAACATGTTTCTAAAAGTGCAAAGGAAGCTGCCAAAGAATTCAATCCAAAAAACCCTTATTTCTGTTCCAAAATCGTTAAGGAAACATATGCGTATGTTACTTCCAATTTTGCTCCAAAGTATCTGAAGCCAAATGCTCCAATAAAGATCCAAAACTCTCATGGTGAGGAGTGGGAAGTTTTTGGAATAGTGCATAATGCCAAAGTACCATCAACAATGAAATTAACGAGGAGATTTTCAATATTTCAAAAGGACAACAATCTGTCACCCGGAGATTATTGTGTGTTTGAGCTGATCAAGAATAATCCGGTGGTGCTAAAAGTCACAATGTTTCGCGCGGCTGACTATGGCGATTAA 765 0.3739 MKVILPSPIHDTQIRIPDEFITRFRNELKNVATIVVPDGCDWEMELKKCRNDVYFCNKWQQFAEYYSIVYGSYLCFKYEGNSKFSVVIFDATSAEICYPFKSQSTNGETSTKCRSPRKRSKVGTSENLGENVKSMSKHVSKSAKEAAKEFNPKNPYFCSKIVKETYAYVTSNFAPKYLKPNAPIKIQNSHGEEWEVFGIVHNAKVPSTMKLTRRFSIFQKDNNLSPGDYCVFELIKNNPVVLKVTMFRAADYGD* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2040 254 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 131 249 - -
Mal7g2040 254 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 2 122 - -
Mal7g2040 254 SUPERFAMILY DNA-binding pseudobarrel domain 152 248 IPR015300 -
Mal7g2040 254 Gene3D - 135 253 IPR015300 -
Mal7g2040 254 CDD B3_DNA 1 90 IPR003340 GO:0003677
Mal7g2040 254 Pfam B3 DNA binding domain 4 91 IPR003340 GO:0003677
Mal7g2040 254 Pfam B3 DNA binding domain 168 249 IPR003340 GO:0003677
Mal7g2040 254 ProSiteProfiles B3 DNA-binding domain profile. 1 92 IPR003340 GO:0003677
Mal7g2040 254 MobiDBLite consensus disorder prediction 103 127 - -
Mal7g2040 254 CDD B3_DNA 155 248 IPR003340 GO:0003677
Mal7g2040 254 Gene3D - 1 93 IPR015300 -
Mal7g2040 254 SMART B3_2 1 92 IPR003340 GO:0003677
Mal7g2040 254 SMART B3_2 157 250 IPR003340 GO:0003677
Mal7g2040 254 SUPERFAMILY DNA-binding pseudobarrel domain 2 91 IPR015300 -
Mal7g2040 254 PANTHER B3 DOMAIN-CONTAINING 131 249 - -
Mal7g2040 254 PANTHER B3 DOMAIN-CONTAINING 2 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2040 Mal-Chr7 73181216 73182724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2040 2 98 B3 DNA Binding Superfamily AT3G18990 43.299 1.60e-24 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal7g2040 B3 2.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2040 - - mtr:MTR_5g070440 364.385