Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2031 ATGTCAAATAGTGGGGATACTCATTGGTGTTATAATTGCATGAGGTCAGTTCGACTGGGACGGCGACATGCGCTTTGCTCTGCTTGTGATGGGGGGTTTGTTCAAGATCTCGATGATATGGTCCATGCTGGCGATGGTGTGGACAGCGTTCAACAACTCAGGGCACAATCGGATTCACATCCTGAACACAGTCCAATGTTTACTACTCCTTTGCTAATCTATGGTGGCCAAATTCCATACAGCTTTTCTGGACAAGGTGGCATTGATGCTCTCTTTAATGGGACTCCAGGAACTGGTGTCACGATAGGTAACTCGGTTAACTATTTTACTGGTCCTGGAGTTGAAGAACTGTTTGAACAGCTTTCGGCTAATGACCGGAGAGGCCCCCCACCTGCATCGCGGTCCTCTATAAATGAAATTCCTACTGTAAAGATCGCGTCGAGGCATCTTCGATCAGATCCACATTGTCCAGTATGCCAGGATAAATTTGAGCTTGGGTCTAATGCAAGACGAATGCCATGTAAACATATGTTTCACTCAGATTGTATTGTACCATGGTTGGTTCAGCACAACACTTGCCCTGTTTGCCGTCAAGAATTGCCACAGCATAGTGGAAGAAGAAGAAGAAACCCTTTATCATTTTTGTGGCCTTTCGGCTCTTCTAATTCTAGAAGTAACGATGGAGCAACTGGAAGCAGTTCAACAACACCAGGGATCCCTGAAAATGCACAACATTCTGGGTGGCCATTTGAGTGA 756 0.4577 MSNSGDTHWCYNCMRSVRLGRRHALCSACDGGFVQDLDDMVHAGDGVDSVQQLRAQSDSHPEHSPMFTTPLLIYGGQIPYSFSGQGGIDALFNGTPGTGVTIGNSVNYFTGPGVEELFEQLSANDRRGPPPASRSSINEIPTVKIASRHLRSDPHCPVCQDKFELGSNARRMPCKHMFHSDCIVPWLVQHNTCPVCRQELPQHSGRRRRNPLSFLWPFGSSNSRSNDGATGSSSTTPGIPENAQHSGWPFE* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2031 251 MobiDBLite consensus disorder prediction 215 242 - -
Mal7g2031 251 CDD RING-H2_RNF126_like 156 197 - -
Mal7g2031 251 Pfam Ring finger domain 155 197 IPR001841 -
Mal7g2031 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 42 - -
Mal7g2031 251 SUPERFAMILY RING/U-box 136 206 - -
Mal7g2031 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 52 205 - -
Mal7g2031 251 SMART ring_2 156 196 IPR001841 -
Mal7g2031 251 Pfam zinc-ribbon 7 36 IPR039525 GO:0061630
Mal7g2031 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 42 - -
Mal7g2031 251 ProSiteProfiles Zinc finger RING-type profile. 156 197 IPR001841 -
Mal7g2031 251 MobiDBLite consensus disorder prediction 211 251 - -
Mal7g2031 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 203 IPR013083 -
Mal7g2031 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 52 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2031 Mal-Chr7 72993101 72993856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2031 103 201 C3H Transcription Factor Family AT5G01980 43.564 2.82e-24 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2031 K11982 - mtr:MTR_1g051105 459.914