Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2015 ATGCCCGCACTCCGTTTCATACCGTTTTCCTCTTTTCCGTTACCCATCCGCAGCATTTCCGTCAAATCTTCTTTTTCATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTTCCCTTCAATTCTCTCACTTCCTCTCTCCTCCACCACTCGCCGCGGAATGTCGTCAAAACCACCACCCTCCGCCTTCGACAAGCTCATGTCCGGCGCACGCGCCGCCGCCGCCAAGAAGAAACCTCTCCCTTCTTCCTCATCTCCAAAAAAACGAAAATCACCTACTCCTCCATCCCCACTCAAAACCCTAGAAACCGTTCAAAACCCTAATAACAATCTCAAAACCCTAGAAACTGTCGAAACCGTTCAAAAACCAGAAGAAACCGTTCACGAAGAGCCACCGAACAAGATCCGAAACACTTCGAAGAGTATAATCGCCGAATTGAAGGAAAAGGTTCCGCAGCTGAAGAAGAAACCAGCGAGTTTAGATCCGAGTTCGGTTGTTTGCTGGGAGAAAGATAAACCTGTGCCGTTTCTGTTTCTCTGTTTGGCGTTCGATATGATTAACGAAGAGAGTGGAAGAATTGTGATCACTGACATTGTGTGTAATCTGTTGAGGACTGTGATTCACGCGACACCGGAGGATCTTGTTCCGGTTGTTTATCTATCTGCGAATAGAATTGCGCCGGCGCATCAAGGGTTAGAATTGGGAATCGGTGATTCTTCGATTATTAAGGCGCTTGCTGAGGCGTGTGGAAGGACTGAGCAACAGATTAAGATTCAGTATAAGGAGAAAGGTGATTTAGGTTTAGTTGCTAAAGCGAGCCGTTCGTCGCAGTCTATGATGCGGAAGCCTGATGCTTTGACTATTAGGAAGGTTTTCAACACATTTCATCTTATTGCTAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCACATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATATAATCCGTTTGCTACAGACAAAATTGCGAATTGGATATGCCGAGCAAACCCTCTTAGCTGCATTAGGCCAAGCTGCTGTGTACACTGAAGAACATTCTAAACCGCCTCCTGAAATTCAGTCTCCTTTTGAAGAGGCTGCTAAAATTGTTAAGAAAGTCTATTCTGTTCTTCCTGACTATGACAAAATTGTGTCTGCACTGCTTACGGATGGTGTATGGGCACTTCCAAAGAATTGTGATTTTACTCCTGGTGTTCCTGTTGGGCCTATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAGTTTCAGGATGTAGAGTTTACGTGTGAATACAAATACGATGGAGAGCGTGCTCAGATACATTACTTGGAGAATGGCTCAGTAGAGATTTACAGTAGAAATGCGGAACGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAACATCTGTAACATCATTTATCCTCGATTGTGAACTTGTTGCATATGATCGGACAAAACAAAGAATTCTTCCTTTCCAGGTGCTTAGTACTCGTGCCCGCAAAAATGTAGCTTTGAGTGACATAAAAGTCGATGTTTGCGTATTTGCTTTTGATTTGTTGTACGTTAATGGCCAAGCACTTCTTCAGGAAAACTTGAAAATCCGTAGAGAGCATCTCTACACCTCTTTCGAGGAGGAAACTGGATTCTTTCAGTTTGCAACTTCAACAACATCAAATGATGTTGAGGAGATACAAAAATTTCTTGACAAAGCCATTGATGCAAGTTGTGAGGGATTAATTATTAAAACATTACATGAAGATGCTACATATGAACCCTCCAAGCGGTCACTCAACTGGCTGAAACTGAAGAAAGATTATATGGAAAATATAGGGGACTCACTAGATTTGGTACCTATTGGTGCTTTCCACGGTCGTGGTAAACGTACAGGAGTGTATGGTGCTTTTCTCCTTGCTTGCTATGACAACGATAACGAAGAATTTCAAAGTATTTGTAAGATAGGAACTGGATTCAAAGAAGAAGTGCTTGAAGAACGTTCTACTAGCCTTCGCTCTAAAGTGATTCCCAAACCAAAGGCATACTATAAATGTGGAGAATCAATCAATCCTGATGTCTGGTTTGACGCGAGTGAGGTGTGGGAGGTGAAAGCTGCAGACCTGACCATTAGCCCTGTTTACCGAGCTGCAATGGGAATAGTAGATTCCAATAAGGGCATATCTCTTCGATTTCCGCGTCTAATTCGAGTTCGCCCTGACAAAGCTCCTGAACAGGCCTCCTCGTCTGAGCAGGTTGCTGAAATGTATAATGCTCAAAAACACAATCACAATGACAAACCGGATGACAATGAAGATGATTGA 2370 0.4283 MPALRFIPFSSFPLPIRSISVKSSFSFSSSSSSSSSLFPSILSLPLSSTTRRGMSSKPPPSAFDKLMSGARAAAAKKKPLPSSSSPKKRKSPTPPSPLKTLETVQNPNNNLKTLETVETVQKPEETVHEEPPNKIRNTSKSIIAELKEKVPQLKKKPASLDPSSVVCWEKDKPVPFLFLCLAFDMINEESGRIVITDIVCNLLRTVIHATPEDLVPVVYLSANRIAPAHQGLELGIGDSSIIKALAEACGRTEQQIKIQYKEKGDLGLVAKASRSSQSMMRKPDALTIRKVFNTFHLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIQSPFEEAAKIVKKVYSVLPDYDKIVSALLTDGVWALPKNCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKTSVTSFILDCELVAYDRTKQRILPFQVLSTRARKNVALSDIKVDVCVFAFDLLYVNGQALLQENLKIRREHLYTSFEEETGFFQFATSTTSNDVEEIQKFLDKAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFKEEVLEERSTSLRSKVIPKPKAYYKCGESINPDVWFDASEVWEVKAADLTISPVYRAAMGIVDSNKGISLRFPRLIRVRPDKAPEQASSSEQVAEMYNAQKHNHNDKPDDNEDD* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2015 789 Pfam DNA ligase N terminus 175 350 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mal7g2015 789 ProSiteProfiles ATP-dependent DNA ligase family profile. 523 659 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mal7g2015 789 Gene3D - 427 625 - -
Mal7g2015 789 Gene3D - 152 419 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mal7g2015 789 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 157 407 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mal7g2015 789 MobiDBLite consensus disorder prediction 756 789 - -
Mal7g2015 789 MobiDBLite consensus disorder prediction 760 774 - -
Mal7g2015 789 PANTHER DNA LIGASE 1 78 789 - -
Mal7g2015 789 MobiDBLite consensus disorder prediction 69 109 - -
Mal7g2015 789 Gene3D DNA ligase/mRNA capping enzyme 446 571 - -
Mal7g2015 789 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 233 772 IPR000977 GO:0003910|GO:0005524|GO:0071897
Mal7g2015 789 CDD OBF_DNA_ligase_I 629 774 - -
Mal7g2015 789 Pfam ATP dependent DNA ligase C terminal region 646 757 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mal7g2015 789 ProSitePatterns ATP-dependent DNA ligase signature 2. 595 621 IPR016059 GO:0003909
Mal7g2015 789 SUPERFAMILY Nucleic acid-binding proteins 629 775 IPR012340 -
Mal7g2015 789 Pfam ATP dependent DNA ligase domain 417 621 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mal7g2015 789 MobiDBLite consensus disorder prediction 775 789 - -
Mal7g2015 789 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 78 789 - -
Mal7g2015 789 CDD Adenylation_DNA_ligase_I_Euk 406 624 - -
Mal7g2015 789 Gene3D - 626 788 IPR012340 -
Mal7g2015 789 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 441 449 IPR016059 GO:0003909
Mal7g2015 789 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 409 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2015 Mal-Chr7 72483027 72489212 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2015 16 789 Core DNA Replication Machinery Family AT1G08130 66.199 0.0 1032
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2015 K10747 - gmx:100783155 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g2015 7 72483027 72489212 Mal7g2015 7 72483027 72489212 ECH