Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2011 ATGGAAACCATGACAGAGTCCTATGATTCCACTAATACACACTCTTCTTCAAATTTTGGATGCACACATTATAGAAGGAGATGCAAGATTATAGCACCATGTTGCAATGAAGTTTTTGACTGTAGGCACTGCCACAATGAAGCTAAGAACTCGGATGAGATTAAACCAGTTGATCGTCATGATATTCCGCGTCATGAAGTTAAAAAGGTTATCTGCTCCTTATGTGACACAGAACAAGATGTTCAACAGTACTGCATAAACTGTGGAGTATGCTTGGGAAAGTACTTTTGTGCTACATGCAAATTCTTTGATGATGATATTTCAAAGCAGCAATACCACTGTGATGAATGTGGCATCTGCAGAACTGGTGGCAGTGATAACTTTTTCCATTGCAAAAGATGTGGATGTTGCTATTCCATGGAAATCAAAGAGGGGCATCATTGTGTAGAAAGAGCAATGCATCATAATTGTCCTATTTGCTTTGAGTATCTGTTTGATACATTGAGAGAAATCAGCGTCTTACCTTGTGGCCATACTATACATTTTGAGTGTGTTAAAGAGATGGAAAAACATCATAGGTACTCATGTCCTGTTTGCTCAAAATCTACCTGTGATATGTCAAATGTGTGGGAGCACCTTGACCAAGTGGTTTCCTCAACTCCAATGCCTGAATCATACAAAAATAAGAAGGTATGGATACTATGCAATGATTGTAGTGTAAACTCCCATGTGCAATTCCACATTGTGGCACATAAGTGTTTGAGTTGCAACTCATACAACACAAGGCAAATACAAGCAAGACCTTCTAGCTCATCATGCTCCTCTAGGGTGGCAGAGATGGTTAGATGA 849 0.3934 METMTESYDSTNTHSSSNFGCTHYRRRCKIIAPCCNEVFDCRHCHNEAKNSDEIKPVDRHDIPRHEVKKVICSLCDTEQDVQQYCINCGVCLGKYFCATCKFFDDDISKQQYHCDECGICRTGGSDNFFHCKRCGCCYSMEIKEGHHCVERAMHHNCPICFEYLFDTLREISVLPCGHTIHFECVKEMEKHHRYSCPVCSKSTCDMSNVWEHLDQVVSSTPMPESYKNKKVWILCNDCSVNSHVQFHIVAHKCLSCNSYNTRQIQARPSSSSCSSRVAEMVR* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2011 282 SUPERFAMILY RING/U-box 155 205 - -
Mal7g2011 282 Gene3D - 228 270 - -
Mal7g2011 282 ProSiteProfiles Zinc finger RING-type profile. 157 200 IPR001841 -
Mal7g2011 282 SMART ring_2 157 199 IPR001841 -
Mal7g2011 282 Pfam Zinc-ribbon 204 262 IPR039512 -
Mal7g2011 282 Pfam Ring finger domain 156 199 IPR001841 -
Mal7g2011 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 202 IPR013083 -
Mal7g2011 282 SUPERFAMILY Zinc hairpin stack 93 150 IPR037275 -
Mal7g2011 282 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 8 280 - -
Mal7g2011 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 8 280 - -
Mal7g2011 282 ProSiteProfiles Zinc finger CHY-type profile. 14 90 IPR008913 GO:0008270
Mal7g2011 282 ProSiteProfiles Zinc finger CTCHY-type profile. 92 156 IPR017921 -
Mal7g2011 282 Pfam CHY zinc finger 21 102 IPR008913 GO:0008270
Mal7g2011 282 SUPERFAMILY CHY zinc finger-like 14 91 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2011 Mal-Chr7 72423511 72427305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2011 19 275 C2H2 Transcription Factor Family AT3G18290 39.544 5.20e-55 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal7g2011 zf-CHY 4.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2011 K10144 - gmx:100812709 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g2011 7 72423511 72427305 Mal7g2011 7 72423511 72427305 ECH