Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2008 ATGGAAGAGTTTGTTATGGAGGAAAAGATTGTGGGTTTTTCTAACAAAGATGCAACCCATGTAGCTAAAGGAAAACGCACCAAGAGGTTAAGACTTTTATCTCCTTGTGGTGTTGTTTCCACAGCTATGACTTCTAGTTGTTCTAGTGGTGAAAATGGGTATTTTGATGAGAGCAACAATGATCTTGAAGATGATGATGATGAAGAAGAGGATTTGGCTAAGTGTTTGATGCTCCTTGCTCAAGGAGGGAATCACAAGCAACATGGTGGTGTTGATGAGAAGAAAAGAGAAAAGGGTAGTATTGGAAATAAAAAGATTGGTGAGATTGTAACAGCCACCACTACTAGCACAAAACATGGTTTGTATATTTATGAATGCAAAACGTGTAACAGAACTTTTCCTTCTTTTCAAGCTTTGGGTGGTCACAGGGCAAGTCACAAAAAGCCTAAAATCATGGCTGAGGAGAAGAAAGCACTGGCGGCACAGCCCTCATCACATGATTCGCAATCAGATAAACTGGTTGCGAAATGTGATGAGTTTGAAGAAATTGTGAAACCTCGCGGGCCCACAATTTCTTTTCAAATGGGGAATCATGGTTTGAAAGCTATTAATGGGAACAAATCCAAGATTCATGAGTGTTCCATTTGTGGTTCTGAATTCACATCTGGACAAGCATTGGGTGGACACATGAGGAGACATAGGGCATCAGCTGTGGCAAACGCAGCAGCTGTCGCGGTCGCGGATGGAGGAGTTAGGCGACGGAATATTTTACAATTGGATCTTAACCTTCCGGCACCGGAGGAGGATCTCCGGGAAACAAAGTTTCAGTTTCCGGCTAGCCAAAAATCAATGGTGATGTCTGCTTCTCCAGCTTTGGTTGGTTGTCATTATTAG 894 0.4251 MEEFVMEEKIVGFSNKDATHVAKGKRTKRLRLLSPCGVVSTAMTSSCSSGENGYFDESNNDLEDDDDEEEDLAKCLMLLAQGGNHKQHGGVDEKKREKGSIGNKKIGEIVTATTTSTKHGLYIYECKTCNRTFPSFQALGGHRASHKKPKIMAEEKKALAAQPSSHDSQSDKLVAKCDEFEEIVKPRGPTISFQMGNHGLKAINGNKSKIHECSICGSEFTSGQALGGHMRRHRASAVANAAAVAVADGGVRRRNILQLDLNLPAPEEDLRETKFQFPASQKSMVMSASPALVGCHY* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2008 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Mal7g2008 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 211 238 IPR013087 -
Mal7g2008 297 PANTHER ZINC FINGER PROTEIN ZAT5 1 297 - -
Mal7g2008 297 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 297 - -
Mal7g2008 297 Pfam C2H2-type zinc finger 211 235 - -
Mal7g2008 297 Pfam C2H2-type zinc finger 124 149 - -
Mal7g2008 297 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Mal7g2008 297 Gene3D Classic Zinc Finger 198 246 - -
Mal7g2008 297 Gene3D Classic Zinc Finger 99 182 - -
Mal7g2008 297 SUPERFAMILY beta-beta-alpha zinc fingers 123 233 IPR036236 -
Mal7g2008 297 SMART c2h2final6 211 233 IPR013087 -
Mal7g2008 297 SMART c2h2final6 124 146 IPR013087 -
Mal7g2008 297 MobiDBLite consensus disorder prediction 48 67 - -
Mal7g2008 297 ProSitePatterns Zinc finger C2H2 type domain signature. 213 233 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2008 Mal-Chr7 72299394 72300287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2008 17 297 C2H2 Transcription Factor Family AT2G28200 43.042 1.76e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal7g2008 zf-C2H2_6 2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2008 - - aprc:113858527 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g2008 7 72299394 72300287 Mal7g2008 7 72299394 72300287 ECH
Mal7g2008 7 72299394 72300287 Mal1g1879 1 24444930 24445970 ECH
Mal7g2008 7 72299394 72300287 Mal1g3129 1 48075219 48076121 ECH
Mal4g0878 4 10824964 10825863 Mal7g2008 7 72299394 72300287 ECH
Mal1g3129 1 48075219 48076121 Mal7g2008 7 72299394 72300287 ECH
Mal4g0878 4 10824964 10825863 Mal7g2008 7 72299394 72300287 PCT