Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal7g1880 | ATGTATAGCAATTTCAAGGAACAAGCAATTGAATACGTGAAACAAGCAGTCACAGAAGACAATGCAGGAAACTACGCAAAAGCGTTTCCTTTATACATGAACGCGTTAGAGTATTTCAAAACACATCTCAAGTACGAGAAAAACCCTAAAATCAAGGAAGCCATTACGCAGAAATTCACCGATTATCTTCGTCGTGCTGAGGAGATTCGTGCTGTGCTTGATGATGGTGGGCCGGGGCCGGCTTCTAATGGCGATGCTGCTATTGCTACGAAGCCGAAAACTAAGGGGAAGGGTGGTGGGGAGGGTGAGGGGGAAGATGCTGAGCAGAGTAAGCTTAGGGCGGGGTTGAATTCCGCGATTGTGAGGGAGAAGCCGAATGTTAAGTGGAATGATGTTGCTGGGTTGGAGAGTGCTAAACAGTCGTTGCAGGAGGCGGTTATCTTGCCTGTTAAGTTTCCACAGTTTTTTACTGGTAAAAGACGACCTTGGAGAGCATTTTTGTTGTACGGACCACCTGGAACAGGTAAATCATACTTGGCCAAGGCTGTTGCAACTGAAGCTGATTCTACGTTTTTCAGTGTTTCTTCGTCAGACCTCGTTTCGAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTTGAAATGGCTCGCGAAAGTGCACCTTCCATCATATTTGTTGATGAAATAGATTCTCTATGTGGTACACGTGGAGAAGGCAATGAAAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTCGGACACAATGATCAGAAAGTTCTCGTTCTTGCAGCTACCAATACACCTTATGCTCTAGACCAGGCAATAAGGCGGCGTTTTGATAAGCGTATATACATTCCACTACCAGATTTAAAGGCTCGCCAACACATGTTCAAGGTGCATCTAGGAGATACTCCCCATAACTTGACTGAAAGTGATTTTGAGCACTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATAGCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGTAAAACCCAAGATGCCATGTTTTTCTTTAAGAGTCCGGAAGGTATGTGGATACCATGTGGACAGAAGCAACAAAATGCAGTACAAATTACAATGCAGGATCTTGCCACACAGGGACTTGCTGCAAAGATCCTTCCACCACCTATTTCAAGAATAGATTTTGACAAAGTACTTGCTAGACAAAGGCCTACGGTCAGCAAATCTGACCTTGATGTTCATGAGAGATTCACAAAGGAGTTTGGAGAGGAAGGTTAA | 1302 | 0.4416 | MYSNFKEQAIEYVKQAVTEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTDYLRRAEEIRAVLDDGGPGPASNGDAAIATKPKTKGKGGGEGEGEDAEQSKLRAGLNSAIVREKPNVKWNDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARKTEGFSGSDIAVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGQKQQNAVQITMQDLATQGLAAKILPPPISRIDFDKVLARQRPTVSKSDLDVHERFTKEFGEEG* | 434 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal7g1880 | 433 | Pfam | MIT (microtubule interacting and transport) domain | 7 | 70 | IPR007330 | - | |
| Mal7g1880 | 433 | PANTHER | AAA DOMAIN-CONTAINING | 1 | 433 | - | - | |
| Mal7g1880 | 433 | MobiDBLite | consensus disorder prediction | 96 | 110 | - | - | |
| Mal7g1880 | 433 | MobiDBLite | consensus disorder prediction | 73 | 110 | - | - | |
| Mal7g1880 | 433 | Gene3D | - | 298 | 413 | - | - | |
| Mal7g1880 | 433 | Gene3D | - | 125 | 421 | IPR027417 | - | |
| Mal7g1880 | 433 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 125 | 429 | IPR027417 | - | |
| Mal7g1880 | 433 | CDD | AAA | 133 | 296 | - | - | |
| Mal7g1880 | 433 | Pfam | ATPase family associated with various cellular activities (AAA) | 167 | 296 | IPR003959 | GO:0005524|GO:0016887 | |
| Mal7g1880 | 433 | SMART | smart | 2 | 79 | IPR007330 | - | |
| Mal7g1880 | 433 | SMART | AAA_5 | 162 | 298 | IPR003593 | - | |
| Mal7g1880 | 433 | CDD | MIT_VPS4 | 4 | 77 | IPR045253 | - | |
| Mal7g1880 | 433 | ProSitePatterns | AAA-protein family signature. | 268 | 287 | IPR003960 | GO:0005524|GO:0016887 | |
| Mal7g1880 | 433 | Pfam | Vps4 C terminal oligomerisation domain | 366 | 430 | IPR015415 | - | |
| Mal7g1880 | 433 | Gene3D | - | 6 | 75 | - | - | |
| Mal7g1880 | 433 | PANTHER | AAA-TYPE ATPASE FAMILY PROTEIN | 1 | 433 | - | - | |
| Mal7g1880 | 433 | SUPERFAMILY | MIT domain | 2 | 81 | IPR036181 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal7g1880 | Mal-Chr7 | 65822233 | 65827926 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal7g1880 | 161 | 354 | Calmodulin-binding Proteins | AT3G56690 | 36.224 | 3.67e-35 | 136 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal7g1880 | K12196 | - | qsu:111994600 | 791.956 |