Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g1725 ATGGAACTTCGTTCTCGTCGACAACGCGCTTCCGATGAAATCGATTCTGCGGCTGATAAGGGGAAGCAGCCGATGGAGGATATTGATGAAAAGTGTGACATTGATACAGATGATGATGATCATGTCGCGTCTGAGAAATCTGATTCTGATTATGAAGCTGAAGACTTTGGTGGGCAGTTCCCTTTTGACTTGAATCAGGACCCAACTATAAACATTAGTGATTTTGAGGAAGAAGATGATGCTTCTGATTTATCTGACTTTAGCGAGCCTTCATCTAAACGGAGAAAGACACGGTCTAGAAAGAGAGGAAGAAAATCCAAGGTAGAATTCGGAGAACCTAGTCATGTAGCGAGAGCGCTGGAGTTCGTAGAGAGAACGCTGATGTTCGATGATGATTTACATCCAATGGCTTTTCCTGAAGAAGCTACAATTGATTTACCTGAGGTGACTGAAGAAGCTCCAATTAAATTACCTGAGGTGAAAATGAAGAAAAAAGAAAAGAAAACAAAAAAGAATTCTAAGCCAGTTTTGTTATGGCATGCTTGGAAACAGGAACATGAGAAATGGATTGATCAGAATTTGTCGGAAGATGTTAATTTTGATCAAAGTGAAGTTATGAATGAGACGGCCGAGGCATCGTCAGATCTGATTGTTCCTTTGCTGAGGTATCAAAAGGAATGGTTAGCATGGGCTTTGAAGCAGGAGAGTTCTGTAACTAGAGGAGGAATCCTTGCTGATGAAATGGGTATGGGGAAAACTATTCAAGCAATTGCCCTTGTCCTTGCTAAACGGGAATTGCATCAAATGAGTTGTCAACCATTTGAACACTCAGATTCACCCGAGTCATCTAAAGTCCTGCCTGTGATCAAAGGAACACTTGTCATTTGTCCTGTGGTTGCTGTAACTCAGTGGGTTAGTGAGATTGATCGGTTTACTTTGAAAGGAAGCACTAAAGTTCTGGTTTATCATGGGGCAAAGAGAGGGAAGAGTGCTGAAAAGTTCTCGGAGTATGATTTTGTAATAACAACATATTCTATTGTCGAATCTGAGTACAGAAAACATGTGATGCCTCCTAAGGAAAAGTGCCAGTACTGTGGAAAATTATTTTACCCGAGTAGGTTAGTTTTTCACCAGAAGTACTATTGTGGGCCTGACGCTCTTAGAACAACAAAACAAGCAAAGCAAACCAAGAAAAAGAAAAGAGGTCAGAGTTCAAAGTGGGATGGAGAGTTGGAACAGGGTTCTAACAAAAAGAAGGAAGAGGATCTAGAAGGCAATGATAAGTCATTTCTCCATGCTGTGAAGTGGCAGAGGATCATATTGGATGAGGCGCACTATATAAAATCTAGGCATTGTAACACTGCAAAAGCAGTTCTTGCTTTAGAGTCTTTCTACAAATGGGCATTAAGTGGTACACCCCTTCAGAATCGGGTTGGAGAGCTATATTCTTTGGTACGGTTTCTGCAGATAGTTCCTTATTCCTACAACCTGTGCAAGGACTGTGATTGCAGGACACTTGATCATAGCTCCTCTAAAGTATGCTCAAACTGCTCCCATAGTTCTGTTAGGCATTTTTGTTGGTGGAACAAGAATATCGCCACACCAATTCAATCATCCGGATATGGTGATGATGGGAAAAGAGCTATGATTTTGCTCAAAAACAAACTTTTGAAGAGCATAGTGTTAAGGCGAACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCGCCTAGGATTGTTTCATTGAGGAGGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCACTATACAATGAAAGTCAGGCACAGTTTAATACGTATGTTGAGGAAAATACTCTGACAAATAATTATGCTCATATTTTTGACCTCCTCACACGACTGCGTCAGGCTGTGGATCATCCATATCTTGTGGTGTATTCTCCAACTGCAGCAGCACTAAAAGGTGGGAACTTGGCTAGTAATGGTGATGTTGAACAAGAATGTGGCCTTTGCCATGATGCAGTTGAAGATCCTGTGGTTACAGCCTGTGAACATACTTTTTGCAAGGGATGCTTGATAGATTTCTCTGCTTCCTTAGGACAAGTATCATGCCCCTCATGCTCTAAATTACTCACTGTTGATTTGACTTCCAACAAGGATGCTGTGGTTAATAAAACAACAATTAAGGGTTTCAGATCTTCAAGCATTTTAAACAGAATTCAGATTGAGAATTTTCAGACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTAGATTTATGGTTGAAAGGGATGGTTCTGCAAAAGCGATTGTTTTTAGTCAGTTCACATCATTCTTGGATCTCATAAACTACTCCCTGCAGAAGTCAGGTGTATCTTGCGTTCAATTGGTTGGAAGTATGACATTGAGTGCTAGGGATGCTGCCATTAAGAAATTTACTGATGATCCAGATTGCAAAATTTTTCTGATGAGCTTGAAAGCCGGAGGTGTTGCTCTGAATTTGACCGTAGCATCTCATGTTTTCCTCATGGATCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCTCAAGACAGAATTCACCGGATAGGGCAGTACAAACCAATCAGAATTGTGAGATTTGTCATCGAAAACACAATCGAGGAGAGGATCCTGAAACTTCAAGAGAAGAAGGAACTGGTATTTGAAGGGACTGTAGGTGGTTCTTCGGAGGCTCTAGGGAAGTTGACGGTGGCGGACTTGAAATTTCTTTTTGTTACTTAA 2748 0.4108 MELRSRRQRASDEIDSAADKGKQPMEDIDEKCDIDTDDDDHVASEKSDSDYEAEDFGGQFPFDLNQDPTINISDFEEEDDASDLSDFSEPSSKRRKTRSRKRGRKSKVEFGEPSHVARALEFVERTLMFDDDLHPMAFPEEATIDLPEVTEEAPIKLPEVKMKKKEKKTKKNSKPVLLWHAWKQEHEKWIDQNLSEDVNFDQSEVMNETAEASSDLIVPLLRYQKEWLAWALKQESSVTRGGILADEMGMGKTIQAIALVLAKRELHQMSCQPFEHSDSPESSKVLPVIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKRGKSAEKFSEYDFVITTYSIVESEYRKHVMPPKEKCQYCGKLFYPSRLVFHQKYYCGPDALRTTKQAKQTKKKKRGQSSKWDGELEQGSNKKKEEDLEGNDKSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALESFYKWALSGTPLQNRVGELYSLVRFLQIVPYSYNLCKDCDCRTLDHSSSKVCSNCSHSSVRHFCWWNKNIATPIQSSGYGDDGKRAMILLKNKLLKSIVLRRTKIGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNTYVEENTLTNNYAHIFDLLTRLRQAVDHPYLVVYSPTAAALKGGNLASNGDVEQECGLCHDAVEDPVVTACEHTFCKGCLIDFSASLGQVSCPSCSKLLTVDLTSNKDAVVNKTTIKGFRSSSILNRIQIENFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYSLQKSGVSCVQLVGSMTLSARDAAIKKFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSSEALGKLTVADLKFLFVT* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g1725 915 Pfam Helicase conserved C-terminal domain 745 859 IPR001650 -
Mal7g1725 915 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 913 IPR027417 -
Mal7g1725 915 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 752 912 - -
Mal7g1725 915 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 564 IPR027417 -
Mal7g1725 915 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 741 905 IPR001650 -
Mal7g1725 915 ProSitePatterns Zinc finger RING-type signature. 678 687 IPR017907 -
Mal7g1725 915 Coils Coil 732 752 - -
Mal7g1725 915 CDD DEXDc_SHPRH-like 220 564 - -
Mal7g1725 915 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 160 403 - -
Mal7g1725 915 PANTHER - 426 750 - -
Mal7g1725 915 MobiDBLite consensus disorder prediction 1 110 - -
Mal7g1725 915 Gene3D - 222 365 IPR038718 -
Mal7g1725 915 Gene3D - 374 579 IPR038718 -
Mal7g1725 915 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 426 750 - -
Mal7g1725 915 SMART ring_2 663 702 IPR001841 -
Mal7g1725 915 MobiDBLite consensus disorder prediction 402 423 - -
Mal7g1725 915 CDD SF2_C_SNF 743 870 - -
Mal7g1725 915 Gene3D - 580 910 IPR027417 -
Mal7g1725 915 SUPERFAMILY RING/U-box 660 707 - -
Mal7g1725 915 Pfam SNF2-related domain 235 639 IPR000330 GO:0005524|GO:0140658
Mal7g1725 915 MobiDBLite consensus disorder prediction 392 423 - -
Mal7g1725 915 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 491 IPR014001 -
Mal7g1725 915 SMART helicmild6 776 859 IPR001650 -
Mal7g1725 915 SMART ultradead3 216 509 IPR014001 -
Mal7g1725 915 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 656 729 IPR013083 -
Mal7g1725 915 MobiDBLite consensus disorder prediction 37 53 - -
Mal7g1725 915 Pfam Zinc finger, C3HC4 type (RING finger) 662 702 - -
Mal7g1725 915 ProSiteProfiles Zinc finger RING-type profile. 663 703 IPR001841 -
Mal7g1725 915 PANTHER - 752 912 - -
Mal7g1725 915 PANTHER - 160 403 - -
Mal7g1725 915 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g1725 Mal-Chr7 59330381 59338468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g1725 130 915 RAD5 or RAD16-like Gene Family AT1G05120 65.255 0.0 1071
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal7g1725 SNF2_N 8.8e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g1725 K15083 - gmx:100798333 1239.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g1725 7 59330381 59338468 Mal7g1725 7 59330381 59338468 ECH