Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g1600 ATGTTAGTGAAAAGCCAAACTAACGGGGATGGACCCAAGTCCCTCGCAGATACATTGGCAAGATGGAAAGAATATAATGCACGGCTTGAATCGAGTGGTGAAGCTGTGAAGCCAGTTAGGAAAGTTCCTGCCAAAGGATCAAAGAAAGGGTGTATGAAAGGTAAAGGGGGACCCGAGAACTCGCGTTGTAATTATAGAGGTGTTAGGCAAAGGACGTGGGGAAAATGGGTTGCTGAAATTCGTGAGCCAAACAGAGGAAATAGGCTCTGGTTAGGTACATTTTCAAATGCAGTAGGCGCTGCTCTTGCTTATGATGAAGCAGCGAGGGCAATGTACGGTTCTTGTGCGCGACTGAACTTTCCCAATGTAGAAGTGACCAATTTCTCTCATATGGAATCTTTGAAAGATTCTCCTGTTGCAGAACAATCTGGTTTTGTGAAGACAACAGCAGAAAATACCGAGTCTGTGATATCGCCCGATAACAATCGGGTAGATGCAGATGAGGATGTTGACATGAAACATCTTTCCTTGTCCTTAAGTATGACATCGAATCATGAGGAGAAAGAGGGTGAATCAGGGACTAGTTGA 588 0.4456 MLVKSQTNGDGPKSLADTLARWKEYNARLESSGEAVKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFSNAVGAALAYDEAARAMYGSCARLNFPNVEVTNFSHMESLKDSPVAEQSGFVKTTAENTESVISPDNNRVDADEDVDMKHLSLSLSMTSNHEEKEGESGTS* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g1600 195 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 189 - -
Mal7g1600 195 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Mal7g1600 195 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Mal7g1600 195 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 189 - -
Mal7g1600 195 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Mal7g1600 195 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Mal7g1600 195 PRINTS Ethylene responsive element binding protein signature 103 123 IPR001471 GO:0003700|GO:0006355
Mal7g1600 195 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Mal7g1600 195 MobiDBLite consensus disorder prediction 33 59 - -
Mal7g1600 195 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Mal7g1600 195 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Mal7g1600 195 MobiDBLite consensus disorder prediction 150 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g1600 Mal-Chr7 52556620 52557207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g1600 11 162 AP2-EREBP Transcription Factor Family AT2G40340 53.846 1.89e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal7g1600 AP2 2.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g1600 - K09286 gmx:100499747 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1244 4 17908316 17908897 Mal7g1600 7 52556620 52557207 PCT