Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g1475 ATGGACGCTCTCGATTCAAATCCACCCTGCGATCCACCTCCACACATCGATAATCCACAACACCAATCCGAAACCCTAATCCCCGAAAACGGCATCAACGGAAACCAATCACAAAACGGCACCACCACAACCACCGCCGCCGTCGATAACAACGATTCACGTCCACCGATTCCAAATCAACTTCTCTCCGAAAACGGTTTAACCGGCGGCAACACCCGAAGCGGAACCGACAAGGATCAATCAGGCGGAGAAGAAGAAACAACCAGCAAACGCCGTCGGAGAAGTCGATGGGACCCACAGCCAGATTCAAACGATCAGACCGGAGAAGGCGGCGCTGGGACGAAGAAAAGGAAGTCACGATGGGCGGATGATGAACCGAAACCGGTAATTCAACTTCCTGATTTCATGGGTGGTATTGAATTTGATCCTGAAATTCAAACTTTGAATAGTAGATTACTTGAGATTAGTAGAATGTTGCAATCTGGTTTTCCTTTAGATGATCGTCCTGAAGGTGCTAGATCTCCTTCACCTGAACCTATATATGATAATATGGGTATTAGGATTAATACTAGAGAGTATCGTGCTCGTGAGAGGTTGCAAAAAGAGAGGCAAGAAATTATTTCTCAGATTATTAAGAAAAATCCTGCTTTTAAGCCACCTGCTGATTATAGACCACCAAAGCTTCAGAAGAAGCTTTATATACCGATGAAAGAGTATCCGGGTTATAATTTTATAGGGCTTATTATTGGGCCTAGGGGGAATACTCAGAAGAGGATGGAAAAGGAAACTGGTGCTAAGATTGTGATTCGGGGTAAAGGGTCGGTGAAAGAAGGTAGGTTGCAACAGAAGAGGGATTTGAAACCGGATCCGTCGGAGAATGAGGATTTGCATGTTTTGGTTGAGGCGGATACGGCTGATGCCCTTGAAGCTGCGGCTGGTATGGTGGAGAAGTTGTTGCAGCCTGTGGATGAGGTTTTGAATGAGCATAAGAGGCAACAACTTAGGGAACTCGCAGCTTTGAATGGGACCATTAGGGATGAGGAGTATTGTAGGTTGTGTGGTGAGCCTGGGCATCGTCAGTATGCGTGTCCTACGAGGACTTCGACTTTTAAGAGTGAGGTTGTTTGTAAGCATTGTGGGGATGGTGGTCATCCTAGCATTGATTGTCCGGTGAAAGGTGCTACCGGGAAGAAGATGGATGATGAGTATCAGAATTTCTTGGCTGAGTTGGGTGGTACGGTTCCTGAATCTGCAATTAAGACAACTAGTACTTTGGCACTTGGTTCGGGCAATACTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGTTCGGCTGGTAGTACACCACAAGCTGGGTTAGGGGCTGGTGCAGTTAAAAAGGAAATTGATGATACAAATCTGTACATCGGGTATTTGCCACCCACTCTTGAGGATGATGGCTTGATCCAATTGTTTCAGCAATTTGGTGAGATAGTTATGGCAAAAGTTATTAAGGATCGAATGACTGGTTTGAGTAAAGGATATGGTTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATTGTGGCCATGAATGGTTATCGTCTTGAGGGACGAACCATTGCAGTGAGAGTTGCTGGAAAGCCTCCTCAGCCTGTTGTACCTCCCGGCCCACCAGCGTCGGCTGTGCCCACTTATCCTGTTCAAAGCCAGCCACATGGTGCCTATCCATCCCAACAATATACCGGCGGTGGTCCTCTTGGGGGTGCTCCTCCTGGGAGTTACGGAGGTACTCCAGTCCCGTGGGGGCCTCCTATTCCTCCTCCATACAATCCTTATGCTCCTCCTCCACCCGGGTCAACTATGTATCCTCCTATGCATGGTCAACCTATGCCTCCTTATGGTGTTCAATATCCTCCCATGCCGACAGGTCCCCCTGGTGCCACGCCCCCACCCCCGCCCCCAGCTTCTGGTGAAATGCAGCAGAATTACCCTCCTGGAGTGCAGTCTGATAATAATAATAATACATCTACTCAGTCTGTACCGACCAACATGTATGGAAACACTGTACCTTCAATGCCACCAGCAGCTCCACCAACATATCCTGCATCTTATGGATATCCTCCACCACCTTACTACAATGCAGTTCCTCCACCACCTCTCCCTCCTGCCCCTACTTCAGACCAATCACACAGCATTGCAAATGCGCCTTGGGCCAGTAATCATCCTGTTCCACCTCCTCCTTCATCTGCAGATCAATCCCAGAGCATTGGAAATGTGCCCCCACCTATGCCTCTTCCCAACTCATCGGTGGAGAAGACATCATATGGAGCTGATTCAGAGTATGAGAAATTCATGGCAGAGATGAAATGA 2358 0.4779 MDALDSNPPCDPPPHIDNPQHQSETLIPENGINGNQSQNGTTTTTAAVDNNDSRPPIPNQLLSENGLTGGNTRSGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQTGEGGAGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQTLNSRLLEISRMLQSGFPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTADALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESAIKTTSTLALGSGNTGSNPPWANNSGSAGSTPQAGLGAGAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVQSQPHGAYPSQQYTGGGPLGGAPPGSYGGTPVPWGPPIPPPYNPYAPPPPGSTMYPPMHGQPMPPYGVQYPPMPTGPPGATPPPPPPASGEMQQNYPPGVQSDNNNNTSTQSVPTNMYGNTVPSMPPAAPPTYPASYGYPPPPYYNAVPPPPLPPAPTSDQSHSIANAPWASNHPVPPPPSSADQSQSIGNVPPPMPLPNSSVEKTSYGADSEYEKFMAEMK* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g1475 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 465 543 IPR000504 GO:0003723
Mal7g1475 785 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 228 354 IPR036612 GO:0003723
Mal7g1475 785 SUPERFAMILY Retrovirus zinc finger-like domains 346 392 IPR036875 GO:0003676|GO:0008270
Mal7g1475 785 SMART rrm1_1 466 539 IPR000504 GO:0003723
Mal7g1475 785 MobiDBLite consensus disorder prediction 18 77 - -
Mal7g1475 785 MobiDBLite consensus disorder prediction 78 100 - -
Mal7g1475 785 Pfam Splicing factor 1 helix-hairpin domain 117 224 IPR032570 -
Mal7g1475 785 MobiDBLite consensus disorder prediction 546 560 - -
Mal7g1475 785 CDD SF1_like-KH 229 345 - -
Mal7g1475 785 MobiDBLite consensus disorder prediction 273 293 - -
Mal7g1475 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 467 536 IPR000504 GO:0003723
Mal7g1475 785 MobiDBLite consensus disorder prediction 111 127 - -
Mal7g1475 785 MobiDBLite consensus disorder prediction 429 453 - -
Mal7g1475 785 MobiDBLite consensus disorder prediction 546 595 - -
Mal7g1475 785 MobiDBLite consensus disorder prediction 629 655 - -
Mal7g1475 785 MobiDBLite consensus disorder prediction 657 685 - -
Mal7g1475 785 ProSiteProfiles Zinc finger CCHC-type profile. 376 390 IPR001878 GO:0003676|GO:0008270
Mal7g1475 785 Pfam KH domain 243 291 IPR004088 GO:0003723
Mal7g1475 785 SMART kh_6 228 320 IPR004087 GO:0003676
Mal7g1475 785 Gene3D - 349 401 - -
Mal7g1475 785 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 44 785 - -
Mal7g1475 785 SMART c2hcfinal6 375 391 IPR001878 GO:0003676|GO:0008270
Mal7g1475 785 SMART c2hcfinal6 349 365 IPR001878 GO:0003676|GO:0008270
Mal7g1475 785 MobiDBLite consensus disorder prediction 429 449 - -
Mal7g1475 785 PANTHER RNA-BINDING PROTEIN RELATED 44 785 IPR045071 -
Mal7g1475 785 MobiDBLite consensus disorder prediction 1 129 - -
Mal7g1475 785 ProSiteProfiles Zinc finger CCHC-type profile. 350 364 IPR001878 GO:0003676|GO:0008270
Mal7g1475 785 Gene3D - 440 547 IPR012677 -
Mal7g1475 785 Gene3D - 142 219 - -
Mal7g1475 785 MobiDBLite consensus disorder prediction 629 785 - -
Mal7g1475 785 ProSiteProfiles Type-1 KH domain profile. 243 315 - -
Mal7g1475 785 Gene3D K Homology domain, type 1 220 348 IPR036612 GO:0003723
Mal7g1475 785 SUPERFAMILY RNA-binding domain, RBD 461 556 IPR035979 GO:0003676
Mal7g1475 785 MobiDBLite consensus disorder prediction 687 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g1475 Mal-Chr7 47147482 47149839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g1475 465 596 Eukaryotic Initiation Factors Gene Family AT3G16380 29.496 1.56e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g1475 K13095 - gmx:100800982 1076.62