Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g1377 ATGAAATCAGCATCTGCACCACCAAACCCATCATGTTCATCAGGGAACAGTTCCAACAACGATGCCGGCGATGTCGGTGATTTCGAATGTAACATATGTTTTGATTTGGCACAGGATCCAGTGATTACACTATGTGGTCATTTATTTTGCTGGCCATGTCTATATAAATGGTTGCATCATCATTCACATTGTCAAGAATGTCCTGTTTGTAAAGCACTTGTTCAGGAAGAGAAATTGGTTCCTCTTTATGGTAGAGGAAAATCGCAGACGGATCCGAGGAGTAAATCGTATCCAGGGATGGAGATTCCTCGTCGTCCTTCGGGACAGAGGCCGCAAACCGCGCCGAATCCACCACCTCATAGTAATGGGAATTTTGCTGCTGGGATTGGATTGATGGGCGGGTTTATTCCGACTGCTACTGCTAGATTTGGAAACTTTTCGTTTTCGACGGGTTTTGGTGGGTTCGGTGGGTTTATCCCGTCGCTTATGAATATACACTTTCATGGTTTTCAGGATGCTACTGTTTATGGGACAACTTCTGGTTATCCATTTGGGTTTAGCGGGTTTCAGGGTGGGAATTCAAGAGGTTTTAATTCGCAGGCGGCAACGGGGCAAGTGCAGCGGCAGGAGGATAATTGTTTGAAGAATTTGCTTATGTTGATTGGATTTCTCGTCCTTCTTACGGTTATTTTTTTTATGTAA 702 0.443 MKSASAPPNPSCSSGNSSNNDAGDVGDFECNICFDLAQDPVITLCGHLFCWPCLYKWLHHHSHCQECPVCKALVQEEKLVPLYGRGKSQTDPRSKSYPGMEIPRRPSGQRPQTAPNPPPHSNGNFAAGIGLMGGFIPTATARFGNFSFSTGFGGFGGFIPSLMNIHFHGFQDATVYGTTSGYPFGFSGFQGGNSRGFNSQAATGQVQRQEDNCLKNLLMLIGFLVLLTVIFFM* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g1377 233 Pfam Zinc finger, C3HC4 type (RING finger) 29 70 - -
Mal7g1377 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 231 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mal7g1377 233 PANTHER RING ZINC FINGER PROTEIN-RELATED 4 231 - -
Mal7g1377 233 CDD RING-HC_AtRMA_like 28 72 - -
Mal7g1377 233 SUPERFAMILY RING/U-box 26 83 - -
Mal7g1377 233 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Mal7g1377 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 91 IPR013083 -
Mal7g1377 233 MobiDBLite consensus disorder prediction 84 123 - -
Mal7g1377 233 SMART ring_2 30 70 IPR001841 -
Mal7g1377 233 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g1377 Mal-Chr7 43167385 43168086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g1377 16 231 C3H Transcription Factor Family AT2G23780 61.086 4.90e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g1377 K10666 - gmx:100814783 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g1377 7 43167385 43168086 Mal7g1377 7 43167385 43168086 ECH