Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g1270 ATGGGTAGGGGAAAGATTGAGATAAAAAGAATTGAAAATGCTAATAGCAGACAAGTTACGTTTTCAAAGAGAAGAACTGGGTTGTTGAAGAAAGCTCAAGAGTTAGCTATTCTTTGTGATGCTGAGGTTGCTGTTATCATTTTCTCCAACACAGGGAAACTTTTTGAGTTTTCCAGTTCTGGTATGAAGCGAACACTCTCAAGATACAACAAATGCACAGATTCTTCAGAGAGTGCATCAGTGGAATACAAAACAGAGATACTTCCGACGGAAGATTCTAAGATGGTGGAGATTCTTAAAGATGAAATTGCAAAGCTAGAAACAAATCAATTACGGCTGTTGGGAAAGGACTTAACTGGATTGGGAATAAAGGAACTGCAACATCTAGAGCAGCAAATTAATGAGGGATTGTCATCTGTGAAGGAGAGGAAGGAGGAATTACTCATGGAACAACTGGAGCAGTCTAGAATACAGGAGCAGAAGGCTATGCTGGAGAATGAAACTTTGAGGAGACAGGTTGAAGAGCTTCGGTGCTTGTTTCCGATGACAGAGCATGTAATGCCATCTTATCTTCAGTATCATCAACATGTGGAAAGAAATAATTCCTTTGTAGATAATGGTGTTAAGTGTCCCAGCTTGACAAGAAACTGCTCAAATGAGGAAGCTGATTCAGACACCACATTGCATTTAGGGTTACCATCTGATGTTCATCGCAAGAAGAAGGCTCCTGAGAAAAATACCATTTCTAATGATTTCATTGAATCAGATTGA 771 0.3943 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSESASVEYKTEILPTEDSKMVEILKDEIAKLETNQLRLLGKDLTGLGIKELQHLEQQINEGLSSVKERKEELLMEQLEQSRIQEQKAMLENETLRRQVEELRCLFPMTEHVMPSYLQYHQHVERNNSFVDNGVKCPSLTRNCSNEEADSDTTLHLGLPSDVHRKKKAPEKNTISNDFIESD* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g1270 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal7g1270 256 PANTHER MADS BOX PROTEIN 1 236 - -
Mal7g1270 256 Coils Coil 126 146 - -
Mal7g1270 256 Gene3D - 14 89 IPR036879 GO:0003677|GO:0046983
Mal7g1270 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal7g1270 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal7g1270 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal7g1270 256 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mal7g1270 256 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal7g1270 256 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 236 - -
Mal7g1270 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal7g1270 256 Pfam K-box region 96 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal7g1270 256 Coils Coil 152 179 - -
Mal7g1270 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal7g1270 256 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Mal7g1270 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal7g1270 256 MobiDBLite consensus disorder prediction 237 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g1270 Mal-Chr7 41176161 41179816 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g1270 1 256 MADS-box Gene Family AT5G13790 54.864 8.86e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal7g1270 K-box 5.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g1270 - - rcu:8259342 358.221