Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g1242 ATGGCCCAACAATATCCTTGTGATGGAGAAGGTTATTGTTTGGCATGCAAGATTCACCCAATAGAAGAAGAGATGTTGCAATGTGTCAAGTGCGTTACCTTGTGGCATTTGTCATGTCTCTCCATCGACCATCCACAAACTCTAGTTGAGACAATGAATTGGATATGTCCTGACTGTGTAAACATGGATAGACCATTTCTCCCATTTACACATCAAGTTCATAATGATTTCGATGCAAATATGGTGCCTGCAATGTTGATGTCGGAAAGTGATAATAACAACTTTGATGACATTAACATGTGTTTGTCTAATACTCTTGCTAGAGATCTCCAATGTCCCATCTGCTGTGAATTATTTGAGAGGCCCGTCACGAAAGGAAATAATAATACTTGTGCCATATGTCGTCGTGACATTCCAAAGAAAATTTGTATCAATTCTGCCCTAGAAATTGTGATTCGTGCAACTAAGCATGACTTCGAGAAAAATAGGGGTGTGCTTGTTGGTGATACATGGTCACATAGGGCTATGTGTAAGCAATGGGGTGCTCAGTTTCCACAAGTAGCTGGTATTAGTGGACACTCAGATCATGGTTCACAATTTGTTGTTCTTGTTGGTGGTTATTTTGATGATGACGATCATGGTGAATGGTTTCTCTATACAGGAAGTGATGGTAATGATCTTGATGGAAACAAACACATGAACAAGAAACAGTCTTCTGACCAAGAGTTTAAAGAATACAATCTTTCCCTTCAAGTAAGTTGTCTGAAGGGTTATCCCATTCGAGTTTTGAGATCTAACAAAGATAAGAGATCCTCATATGCCCCTAAGAGTGGATACCGTTATGATGGAATTTATAGAATTGAAAAATGTTGGCAAGTACCAGGACAACAGGGTTTCTTAGTTTGCCGTTTTCTGTTTGTTAGATGTGACAATAAGGGTGTCCCTTGGATAATAAGTGATAATCATGGGGACAGGCCAAGACCCTTGCCAATTGTTCCTGAACTTGAAAAGGCTAATGTCGTTTATGAAAGGACTGAAGCTCCATTTTGGGATTTTGATGAAACAAAGTTGGGTCTTGTGGCTATCGCTAACAACAATAATATTGTTTCTATTTGGTTCACTTCTAAAGGGAAGCCAATGTTTTCCTTCTTTGGTTCATGTTTTGTTAGGGAGTGTCTTGAGTGGAGAGCTCTCATTTTCCTCTTCATTGTAGTTAATGTCTATTATGTGTGTTCGTTAGTGGAGGGAGGTGGTCCATTTGAAGGGGTTGACGGGGGAGATGTTTGGTGTGTGGTGGGAGAGTTTCATTTGATACTCTTTGATTCCGAGGGAGTGTAG 1338 0.3991 MAQQYPCDGEGYCLACKIHPIEEEMLQCVKCVTLWHLSCLSIDHPQTLVETMNWICPDCVNMDRPFLPFTHQVHNDFDANMVPAMLMSESDNNNFDDINMCLSNTLARDLQCPICCELFERPVTKGNNNTCAICRRDIPKKICINSALEIVIRATKHDFEKNRGVLVGDTWSHRAMCKQWGAQFPQVAGISGHSDHGSQFVVLVGGYFDDDDHGEWFLYTGSDGNDLDGNKHMNKKQSSDQEFKEYNLSLQVSCLKGYPIRVLRSNKDKRSSYAPKSGYRYDGIYRIEKCWQVPGQQGFLVCRFLFVRCDNKGVPWIISDNHGDRPRPLPIVPELEKANVVYERTEAPFWDFDETKLGLVAIANNNNIVSIWFTSKGKPMFSFFGSCFVRECLEWRALIFLFIVVNVYYVCSLVEGGGPFEGVDGGDVWCVVGEFHLILFDSEGV* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g1242 445 ProSitePatterns Zinc finger PHD-type signature. 13 59 IPR019786 -
Mal7g1242 445 ProSiteProfiles YDG domain profile. 160 308 IPR003105 -
Mal7g1242 445 Pfam PHD-finger 12 61 IPR019787 -
Mal7g1242 445 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 3 92 - -
Mal7g1242 445 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 156 356 - -
Mal7g1242 445 ProSiteProfiles Zinc finger PHD-type profile. 10 62 IPR019787 -
Mal7g1242 445 CDD PHD_SF 12 59 - -
Mal7g1242 445 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 92 IPR045134 -
Mal7g1242 445 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 156 356 IPR045134 -
Mal7g1242 445 SUPERFAMILY PUA domain-like 161 318 IPR015947 -
Mal7g1242 445 Gene3D - 154 324 IPR036987 -
Mal7g1242 445 Pfam SAD/SRA domain 161 311 IPR003105 -
Mal7g1242 445 SUPERFAMILY FYVE/PHD zinc finger 3 65 IPR011011 -
Mal7g1242 445 SMART G9a_1 155 312 IPR003105 -
Mal7g1242 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 64 IPR013083 -
Mal7g1242 445 SMART PHD_3 12 60 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g1242 Mal-Chr7 40169360 40174581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g1242 155 356 C2H2 Transcription Factor Family AT5G39550 63.054 2.77e-86 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal7g1242 SAD_SRA 5.8e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g1242 K10638 - gmx:100801535 296.975